BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF01RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig956 1310 0.0
>3x_Contig956
Length = 4347
Score = 1310 bits (661), Expect = 0.0
Identities = 738/756 (97%), Gaps = 6/756 (0%)
Strand = Plus / Minus
Query: 52 gcttcttcagttcgtttttagaag-tttctttt-acaatgagtttactaacagacctttt 109
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 4118 gcttcttcagttcgtttttagaaggtttcttttcacaatgagtttactaacagacctttt 4059
Query: 110 attcaatatttcggaaacagactgtgaagagaacggtcagaattaagaccaagcaatctg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4058 attcaatatttcggaaacagactgtgaagagaacggtcagaattaagaccaagcaatctg 3999
Query: 170 tcctaccggatgtaccacctccagtagaaaactttcctatgcgtcaatggaccattgttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3998 tcctaccggatgtaccacctccagtagaaaactttcctatgcgtcaatggaccattgaat 3939
Query: 230 tagttcttttggatgaacaaggaaacgaaattccagccacgatatttgataaggtagtgt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3938 tagttcttttggatgaacaaggaaacgaaattccagccacgatatttgataaggtagtgt 3879
Query: 290 atcatttgcatccaacttttgcaaaccctcatagaacattcacggaacctccttttagaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3878 atcatttgcatccaacttttgcaaaccctcatagaacattcacggaacctccttttagaa 3819
Query: 350 ttgaagaacaaggctggggtggctttgaattgttgataagtgcgcatcttcttgagaaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3818 ttgaagaacaaggctggggtggctttgaattgttgataagtgcgcatcttcttgagaaag 3759
Query: 410 ggggcgagaagaagataactcacgacctacatttcatgaaagatgcctatgaaattgatc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 ggggcgagaagaagataactcacgacctacatttcatgaaagatgcctatgaaattgatc 3699
Query: 470 atgtaatccaagttcctaccaataagcctcttctaagagcagaactagagaaaagtggac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 atgtaatccaagttcctaccaataagcctcttctaagagcagaactagagaaaagtggac 3639
Query: 530 ctgtcgatgaagtagcatcaacagcagcagcaactccaaatgcaacagcgacagctgcca 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 ctgtcgatgaagtagcatcaacagcagcagcaactccaaatgcaacagcgacagctgcca 3579
Query: 590 ccactccaggtgacaagagaaaagcatctactgtcaatggtgatgt-aaaacgataaaag 648
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 3578 ccactccaggtgacaagagaaaagcatctactgtcaatggtgatgtaaaaacgaaaaaag 3519
Query: 649 ccaagaccgnctccgctt-aacagtgaaaggctctgtgaacttgg-aaaggtagcatttg 706
||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||
Sbjct: 3518 ccaagaccgcctccgcttcaacagtgaaaggctctgtgaacttggaaaagttagcatttg 3459
Query: 707 gctttacaaaaactaacgaggatacattggttggagtagtacaaatgataacttgattac 766
|||| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 3458 gcttaacaaaactaaacgaggatacattggttggagtagtacaaatgataac-tgataac 3400
Query: 767 aaaactcccgaaatgaattttacgaacaatatcgaa 802
|||||||| ||||||||| |||||||||||||||||
Sbjct: 3399 aaaactccagaaatgaatattacgaacaatatcgaa 3364
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8080
Number of Sequences: 1807
Number of extensions: 8080
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)