BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF02FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1532 0.0
>3x_Contig1451
Length = 8346
Score = 1532 bits (773), Expect = 0.0
Identities = 811/821 (98%), Gaps = 2/821 (0%)
Strand = Plus / Minus
Query: 86 tcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattttgaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tcaaaacagcaatacttggtttgttagcaagtctcttttgtctttctgatatattttgaa 800
Query: 146 gtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtcaatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtacttcatccgcttgatcctcaaaactgtcggaaccctcagcatcctcatcgtcaatat 740
Query: 206 cagcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatcggccc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagcccgttcttttcgtactatggcttgttcccgttttgaatcatcatcctcatcggccc 680
Query: 266 ctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgataacta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctgtagccgaagctttaaatctttgtaacactttattgagactttcatccttgataacta 620
Query: 326 aaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttgtaaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaggttcattaattacctgttgcgaggtgttgccattctctgatgacacttgttgtaaca 560
Query: 386 aactggaaagcctcttcttcctttcttctgcatcctctttcacagatccatttttattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aactggaaagcctcttcttcctttcttctgcatcctctttcacagatccatttttattct 500
Query: 446 ttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtgggcagtt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttgaacggcgtttattagccttggctttctttaccatagtgcaatatctggtgggcagtt 440
Query: 506 gactgttgttatattaataagcagtcgagccagaatactattgtatgctcatctgtcaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gactgttgttatattaataagcagtcgagccagaatactattgtatgctcatctgtcaat 380
Query: 566 ttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttgaaattt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgccttttttatgtcctttattaagaccacatatatttttcaattaaatgttgaaattt 320
Query: 626 ataccattatattatacgtgaacagatatggcaacattcaacggtcttgtatacatgtga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataccattatattatacgtgaacagatatggcaacattcaacggtcttgtatacatgtga 260
Query: 686 tagatgctatatgactatggataataacgaatcactcttctaaattcttgagtctatcgg 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagatgctatatgactatggataataacgaatcactcttctaaattcttgagtctatcgt 200
Query: 746 tgattgaatcggcgaatttgttaaattgtacattatcgtcattcactttccgcagtaagt 805
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 199 tgattgaatcggcgaatttgttaaattgtacatcatcgtcattcactttccgcagtaagt 140
Query: 806 tctgttacttttgctgaatatctgaagctatctc-aacacggggggaacatcttcg-tgg 863
|||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct: 139 cctgtaacttttgctgaatatctgaagctatctcaaacacggtgggaacatcttcgttgg 80
Query: 864 gattaccaccattttctgatccttttggttcagggttaaca 904
|||||||| ||||||||||||||||||||||||| |||||
Sbjct: 79 aattaccactattttctgatccttttggttcaggggtaaca 39
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6854
Number of Sequences: 1807
Number of extensions: 6854
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)