BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF02RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1114 0.0
>3x_Contig1640
Length = 15521
Score = 1114 bits (562), Expect = 0.0
Identities = 709/750 (94%), Gaps = 6/750 (0%)
Strand = Plus / Plus
Query: 43 cttttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11342 cttttgtcaattcgacgttctatgaactaggtccaacgtttcctatctagttgaaggtag 11401
Query: 103 ccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11402 ccctacgtttgaagtcgttattgttttcttgctaaatactatgatcctccctattattgt 11461
Query: 163 tatttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaatagac 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 11462 tatttttattgtaacaatcgcactttctttattttcaacactaattcaaggttaaaagac 11521
Query: 223 aaacgttctatacgcatataactgcattcagttcaagcattgatctcgagcgttaacaaa 282
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11522 aaacgttctagacgcatataactgcattcagttcaggcattgatctcgagcgttaacaaa 11581
Query: 283 ctagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11582 ctagttggacaatttcagatgctcataaattgctgaagatccaggaatgttcagcacctc 11641
Query: 343 gaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11642 gaaaggtagtatgtcagttcaaccaatatcgtaaaatagtgactgaagttttcttcacgt 11701
Query: 403 gacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11702 gacccagatctgtgaacggaggtttcaatattaattataacaaagacgatcctgggttgg 11761
Query: 463 cagataaaaactcggatcccttcactgcatagtttatacacaaaaccatatttcctcatt 522
|||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 11762 cagagaaaaactcggatcccttcactgcaaagtttatacacaaaaccatattccctcatt 11821
Query: 523 tgttccaaaactcgtttcacgatggacaggccatggatactattcatagctgaacctgaa 582
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11822 tgtcccaaacttcgtttcacgatggacaggccatggatactattcatagctgaacctgaa 11881
Query: 583 tacagtttaacagaatataagcttttgcataaaga-tttaacaccgttaatt-tacactt 640
||||||||| ||||||||||||||||| ||||| || ||||| ||||||| ||||||
Sbjct: 11882 tacagtttacaggaatataagcttttgcaaaaagagttcaacacggttaattacacactt 11941
Query: 641 tgacgatatgttgatggcactgttaa-gaagcatttttaattttcttggaccacctttcg 699
|||| ||||||||||||||| ||| ||||||||| ||| |||||||||||| | ||||
Sbjct: 11942 gaacgagatgttgatggcactggtaaggaagcatttctaactttcttggaccagcattcg 12001
Query: 700 -tccaaaaaggtccaattgtc-gaatatttgga-ggttttcacatttccttccttaaggt 756
||||| |||||||||||| ||||||||||| ||| | |||| ||| ||| | ||||
Sbjct: 12002 aagcaaaagggtccaattgtcggaatatttggagggtatccacaattcgctcccttaggt 12061
Query: 757 gttttgagtgcagaaatcttggatgatcat 786
| ||||||||||||||||||||||||||||
Sbjct: 12062 ggtttgagtgcagaaatcttggatgatcat 12091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6822
Number of Sequences: 1807
Number of extensions: 6822
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)