BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF03RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1671 1086 0.0
>3x_Contig1671
Length = 12265
Score = 1086 bits (548), Expect = 0.0
Identities = 702/744 (94%), Gaps = 7/744 (0%)
Strand = Plus / Minus
Query: 42 aagcttgaatgaccttcaagttgatctcaaactgaggagacctacagtataaatatct-a 100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5087 aagcttgaatgaccttcaagttgatctcaaactgaggagacctacagtataaatatctca 5028
Query: 101 aatgtgcc-caacatgctcgttctctattttctttttttttttatttaacaggttttccc 159
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5027 aatgtgccacaacatgctcgttctctattttctttttttttttatttaacaggttttccc 4968
Query: 160 gtacattaacccgcaattagaaataaacgttgaagacaggtatgaattattcgatattac 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4967 gtacattaacccgcaattagaaataaacgttgaagacaggtatgaattattcgatattac 4908
Query: 220 acatactgacagtttgagatgcatatcatggtaaaacaataacctgccgctgttccattt 279
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4907 acatactgacagtttgagatgcatatcagggtaaaacaataacctgccgctgttccattt 4848
Query: 280 attaacacaatcatcagcccatccgaatttgaatggcagatcaatgtttcgacattcatt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4847 attaacacaatcatcagcccatccgaatttgaatggcagatcaatgtttcgacattcatt 4788
Query: 340 atcttgggtaacggctgcaagatcaggttcaaggcccatcctttcatctaccatttacag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4787 atcttgggtaacggctgcaagatcaggttcaaggcccatcctttcatctaccatttacag 4728
Query: 400 acctgtagttctaagacgatgttattcgaattactttcatattaagtcatggaagccgaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4727 acctgtagttctaagacgatgttattcgaattactttcatattaagtcatggaagccgaa 4668
Query: 460 cgtgaatcctattagagatgtcttcgctttcacaggatggctacgacactattcagagag 519
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4667 cgtgaatcctaaaagagatgtcttcgctttcacaggagggctacgacactattcagagag 4608
Query: 520 caatgaaaaggggcaatgattcgg-aatccagcaacctgctatgaaacatacgatgcatc 578
||||||||| |||||| || |||| ||||||||||||||||| ||||||||||| ||| |
Sbjct: 4607 caatgaaaa-gggcaaagaatcggaaatccagcaacctgctaggaaacatacgaagcagc 4549
Query: 579 tacaaccaacatttagattcatcaccgaacgcgatagattacttgcacagtgcacaaatt 638
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4548 aacaaccaacatttagattcatcaccgaacgcgatagattacttgcacaggcaacaaata 4489
Query: 639 tacttcagcgctt-taaatttacctcaattggactttgaccagattgttgagggcgctca 697
|||| |||||||| ||||| ||||||| |||||||||||||||| | ||||| || |||
Sbjct: 4488 tactccagcgcttaaaaattaacctcaaatggactttgaccagatcgatgaggccgttca 4429
Query: 698 atacagatgattttattgcattggttaattagggtcctttgtaagaatatggcttctcat 757
||||||||||| ||| |||||| |||| || |||| ||| || ||||| |||||||||
Sbjct: 4428 atacagatgatattagtgcatttgttagtt-gggttcttgttagtaatat-gcttctcat 4371
Query: 758 attttttttcacaacctcttttct 781
|||| | ||||| ||||| |||||
Sbjct: 4370 atttctattcaccacctcatttct 4347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,272
Number of Sequences: 1807
Number of extensions: 15272
Number of successful extensions: 240
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)