BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZF04FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1714                                                        1037   0.0  

>3x_Contig1714 
          Length = 18873

 Score = 1037 bits (523), Expect = 0.0
 Identities = 571/583 (97%), Gaps = 3/583 (0%)
 Strand = Plus / Plus

                                                                        
Query: 85   cttttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaacttta 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5388 cttttcgttccaaaccacccagacatcgatcttgttcaaggtcctgacggaaaaacttta 5447

                                                                        
Query: 145  cgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgt 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5448 cgaattgttgccgttgatgtgggtatgaagtacaaccaaatccgttgtttcgtcaagcgt 5507

                                                                        
Query: 205  ggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggt 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5508 ggtgttgaattgttggttgttccatgggattacgacttcaccaccgaagaatatgacggt 5567

                                                                        
Query: 265  ttgttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 ttgttcatctctaatggtcctggtaatccagccattctgcaggaagtgtccgatagattg 5627

                                                                        
Query: 325  actaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatta 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 actaaagttttagatgcgaagaagaccccagtcttcggtatctgtttgggtcatcaatta 5687

                                                                        
Query: 385  ctaactcgtgcttctggtgcctcaactttgaagatgaagttcggtaacataggtcacaat 444
            ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5688 ctagctcgtgcttctggtgcctcaactttgaagatgaagttcggtaacagaggtcacaat 5747

                                                                        
Query: 445  attccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggtttc 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5748 attccatgtacttcgactgtctctggtagatgttatatcacttctcaaaaccatggtttc 5807

                                                                        
Query: 505  gctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacgat 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5808 gctgtagatgaaactagtttgaccaatggctggaaatcattgttcaccaacgctaacgat 5867

                                                                        
Query: 565  ggtttcaatgaagggatttatcactcagagttgccttactttttcgttc-attccatcct 623
            |||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct: 5868 ggttccaatgaagggatttatcactcagagttgccttacttctccgttcaattccatcct 5927

                                                       
Query: 624  g-attttcttcaggtccaaga-aaactgaattcttgttcgatg 664
            | || | || ||||||||||| | |||||||||||||||||||
Sbjct: 5928 gaatctactccaggtccaagagacactgaattcttgttcgatg 5970


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8013
Number of Sequences: 1807
Number of extensions: 8013
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)