BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF04RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig411 959 0.0
>3x_Contig411
Length = 1533
Score = 959 bits (484), Expect = 0.0
Identities = 518/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Minus
Query: 49 ctcaagaaggtcgatttctacgaatggaaacaggaccagaaccacagagatacgcaggtg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 ctcaagaaggtcgatttctacgaatggaaacaggaccagaaccacagagatacgcaggtg 1377
Query: 109 atgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatgtggt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 atgcgtacgtaccatatccagaaccgtgaggattatcataaatataacagaatatgtggt 1317
Query: 169 gatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccgtatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 gatgtgcgtcgtttggcacataagctatcgcttttacaacctacagatcccttccgtatc 1257
Query: 229 aagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaaatcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 aagcacgagcagctcttgctagagaaactatatcatatgggcattctttcaacaaaatcc 1197
Query: 289 aagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagattgcct 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 aagatatcagcactagagaataaagttacagtctcggctttctgtcgtcgtagattgcct 1137
Query: 349 gtaataatgcatagattaaagatggcacagacactcaaggatgccgttcaattcattgaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 gtaataatgcatagattaaagatggcacagacactcaaggatgccgttcaattcattgaa 1077
Query: 409 caaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaacaagg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 caaggtcatgttagagtaggacctaacttgattacagatccagcatatttggtaacaagg 1017
Query: 469 aatttggaggattacgttacatggacagattcatcccagatcaag-agactggactacgt 527
|||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct: 1016 aatttggaggattacgttacatggacagattcatccaagatcaagaagactgtactacgt 957
Query: 528 tatattaaccccgtccatgattttgacaatgcctaaattgatcctgct 575
|||| ||| | ||| ||||||||||| ||||||| ||||||||||||
Sbjct: 956 tatagaaacgcggtcgatgattttgacgatgcctagattgatcctgct 909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8382
Number of Sequences: 1807
Number of extensions: 8382
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)