BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF06FM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 1128 0.0
>3x_Contig1167
Length = 4801
Score = 1128 bits (569), Expect = 0.0
Identities = 696/729 (95%), Gaps = 7/729 (0%)
Strand = Plus / Minus
Query: 86 atccctcgaagaggaaaacagaacatgcataaaagaccgcacaaaagcggttttgaaggc 145
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4765 atccctcgaagaggaaaacagaacatgcagaaaagaccgcacaaaagcggttttgaaggc 4706
Query: 146 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4705 tccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaatttg 4646
Query: 206 taccgtggaggctctctcgtcatttcatttttttatccactttttatcctcgatctgcta 265
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 4645 taccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgcta 4586
Query: 266 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4585 cgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctatttc 4526
Query: 326 atattttttcccatttattaatcgcaatatatgcagatattacatattttcctaagtagg 385
||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct: 4525 atattttttcccatttattaagcgcaatata-gcagatattacatagtttcctaagtagg 4467
Query: 386 tctttttccttcgaatgatcggaattgcattcaacgattcgtaaatttaccttgtttcga 445
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4466 tctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgtttcga 4407
Query: 446 gaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatattta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 gaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatattta 4347
Query: 506 tgggctcaattagacacttgatataacacaggaattatgcattgtacgcatttttgaaag 565
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4346 tgggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttgaaag 4287
Query: 566 taggggagattctattcgcggtgtaccgagtagtattgtccgttctctgtgttcgagagt 625
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4286 taggggagattctagtcgcggtgtaccgagtagtattgtccgttttctgtgttcgagagt 4227
Query: 626 ctttgaaatt-tttttttttttatttttacgatcgaggagatagcgccatctatgtaatc 684
|||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct: 4226 ctttgaaattttttttttttttatctttacgatcgaggagatggcgccatctatgtaaac 4167
Query: 685 -aaacatcttaat-gtataccggat-tttatggcctgaatctttgacttactgccatcca 741
|||||||||||| ||| ||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 4166 aaaacatcttaatagtagaccggatatctatggcctgcatctttgacttactgccatcca 4107
Query: 742 tttaaccttcttatttaatgctaaac-attaaacaaacttttacatacgtatttttttgt 800
||||||||||||| ||| ||||| || ||||||||| | |||||| ||| | |||||
Sbjct: 4106 -ttaaccttcttatataagcataaacaatcaaacaaactctcacatacatatatatttgt 4048
Query: 801 ttacttata 809
|||| ||||
Sbjct: 4047 ttacatata 4039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,777
Number of Sequences: 1807
Number of extensions: 14777
Number of successful extensions: 1640
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)