BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig890 807 0.0
3x_Contig1423 367 e-101
>3x_Contig890
Length = 3684
Score = 807 bits (407), Expect = 0.0
Identities = 483/503 (96%), Gaps = 4/503 (0%)
Strand = Plus / Minus
Query: 250 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 3625
Query: 310 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 3565
Query: 370 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 3505
Query: 430 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 3445
Query: 490 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 3385
Query: 550 cattatgtaagatgagtatgcgttaagcattggtcaaatagtgaagcagttttagactaa 609
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3384 cattatgtaagaggagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 3325
Query: 610 cc-ctaccatttctgcgtttaattaacggtttctttttccattta-taaaaggcattacc 667
|| |||||||||||||||||| ||||||||||| ||||||||||| |||| | ||||||
Sbjct: 3324 ccactaccatttctgcgtttagttaacggtttc-ttttccatttagtaaatgtcattacg 3266
Query: 668 tatttttttttgtcagcatgccaagtgtaaacattgaatttcaaaagaaaaaagttattt 727
||||||||| ||||||||||| |||||||||||||| || ||||| |||||| |||| |
Sbjct: 3265 tatttttttctgtcagcatgcaaagtgtaaacattggatatcaaaggaaaaagtttatat 3206
Query: 728 tatagaaccgttacccgttaaaa 750
|| |||| ||||| |||||||||
Sbjct: 3205 ta-agaaacgttaaccgttaaaa 3184
>3x_Contig1423
Length = 8454
Score = 367 bits (185), Expect = e-101
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 87 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 130
Query: 147 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 70
Query: 207 gctaattggtgctagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 266
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 10
Query: 267 tctaaacca 275
|||||||||
Sbjct: 9 tctaaacca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7591
Number of Sequences: 1807
Number of extensions: 7591
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)