BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 400 e-111
>3x_Contig1500
Length = 9720
Score = 400 bits (202), Expect = e-111
Identities = 205/206 (99%)
Strand = Plus / Plus
Query: 46 tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9515 tacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgatc 9574
Query: 106 tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9575 tctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcct 9634
Query: 166 atagtttacagggctttgcacaagcctcatcacaaatggttggttaccactccatatgcg 225
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9635 agagtttacagggctttgcacaagcctcatcacaaatggttggttaccactccatatgcg 9694
Query: 226 tcgcatgcgttccacccagtggacgg 251
||||||||||||||||||||||||||
Sbjct: 9695 tcgcatgcgttccacccagtggacgg 9720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,069
Number of Sequences: 1807
Number of extensions: 14069
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)