BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF09RM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig267 1035 0.0
>3x_Contig267
Length = 1905
Score = 1035 bits (522), Expect = 0.0
Identities = 619/638 (97%), Gaps = 10/638 (1%)
Strand = Plus / Plus
Query: 41 aagcttaatgactccctaaag-aaaata-tgacttgaaaaatactaagatcaaacagcta 98
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 444 aagcttaatgactccctaaaggaaaataatgacttgaaaaatactaagatcaaacagcta 503
Query: 99 aaaagtgaagttgatgaattacagacacgtcttgaggtcgaaatatttaaaaatacccaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaagtgaagttgatgaattacagacacgtcttgaggtcgaaatatttaaaaatacccaa 563
Query: 159 ttacaacaagcaaagtcaaaaccggtaaagacgaaagacgatggtactgcacaattacca 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttacaacaagcaaagtcaaaaccggtaaagacgaaagacgatggtactgcacaattacca 623
Query: 219 gctgtatcaacaggtagtaaattacccagtactacaaccaacttgcttttattaagttct 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgtatcaacaggtagtaaattacccagtactacaaccaacttgcttttattaagttct 683
Query: 279 atctcggcaggggctttggctgctgtgtttaaatatgcaacaaagtaaaactaatcataa 338
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 atctcggcaggggctttggctgctgtgtttaaatatgc-acaaagtaaaactaatcataa 742
Query: 339 atatcattcttaaagtaaaaattaatctaagcatttcttgcagactacgggtgatgcgtc 398
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atatcattctttaagtaaaaattaatctaagcatttcttgcagactacgggtgatgcgtc 802
Query: 399 taatcagtgtaaatgggtaaatcatcaagttgaattctctctactgtggtaatgcccaaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 taatcagtgtaaatgggtaaatcatcaagttgaattctctctactgtggtaatgcccaaa 862
Query: 459 agtttagctaattgattcacgaatgcaactgctacatcattaacagatgtagaactatca 518
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 863 agtttagctaattgattcacgaatgcaactgctacatcattaacagaggtagaactatca 922
Query: 519 gggacttgttctcttattgaagttggcttttttttctgacagcccgcacatgggaaaact 578
||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 923 gggacttgttctcttatggaag-tggcttttttttctgacagcccgcacatggtaaaact 981
Query: 579 gttcatataagaacagttctgggtcaacgttaattacaattaccatgttgaagtgacaga 638
||||||||||| ||| |||||||||||||||| ||||| ||||||| ||| |||||||
Sbjct: 982 gttcatataag-acaagtctgggtcaacgttaa-tacaaataccatg-tgaggtgacag- 1037
Query: 639 atctttctgacatgtattgccattactggcaatttttt 676
||| |||||||||||| ||||| |||||||||||||||
Sbjct: 1038 atc-ttctgacatgta-tgccaatactggcaatttttt 1073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9454
Number of Sequences: 1807
Number of extensions: 9454
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)