BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF10FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 1201 0.0
>3x_Contig846
Length = 2695
Score = 1201 bits (606), Expect = 0.0
Identities = 661/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Minus
Query: 89 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 2330
Query: 149 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 2270
Query: 209 cggcgggaataactatcgccagtatgtccgtttcccatggaaaagttaaaagcagttaga 268
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 cggcgggaataacta-cgccagtatgtccgtttcccatggaaaagttaaaagcagttaga 2211
Query: 269 ttcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2210 ttcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatg 2151
Query: 329 gtcaaacattaggttagggttccagttattctttctgcctgttattgttcaaattgacaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 gtcaaacattaggttagggttccagttattctttctgcctgttattgttcaaattgacaa 2091
Query: 389 atcacagggagcttgtttagcacatttgtatttccattccttttgctcaggtgtcacctt 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 atcacagggagcttgtttagcacatttgtatttccattccttttgctcaggtgtcacctt 2031
Query: 449 cgagcaaattcctgtattactaagtaaatatatgtaataataatgtattacgaaagagaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 cgagcaaattcctgtattactaagtaaatatatgtaataataatgtattacgaaagagaa 1971
Query: 509 aaaaagaaaccggatggaaaggatggattttttttagcagccattccatcgcttgaaagc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1970 aaaaagaaaccggatggaaaggatggattttttttagcagccattccatcgcttgaaagc 1911
Query: 569 agctgtccctacagaaattactaagctcacaattgcaatcctaattcttgactattgatt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 agctgtccctacagaaattactaagctcacaattgcaatcctaattcttgactattgatt 1851
Query: 629 tgaaatagccttgtccccttctgtaatttcggcac-atttccatccctaagacgggttcc 687
||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| ||||
Sbjct: 1850 tgaaatagcctcgtcccctcctgtaatttcggcacaattcccatccctaagacggtttcc 1791
Query: 688 atcgatttgaaatattcaccttttattattgtttcttaaaagattgtttcgatgccggga 747
||||||||||||||||||||||||||||||||| ||| | |||| |||||||||| |||
Sbjct: 1790 atcgatttgaaatattcaccttttattattgttcctt-agagatgttttcgatgcc-gga 1733
Query: 748 aaaaattattaaac 761
|||||||| |||||
Sbjct: 1732 aaaaattaataaac 1719
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7331
Number of Sequences: 1807
Number of extensions: 7331
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)