BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF10RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 971 0.0
>3x_Contig1664
Length = 15696
Score = 971 bits (490), Expect = 0.0
Identities = 534/546 (97%), Gaps = 2/546 (0%)
Strand = Plus / Plus
Query: 52 aaatgatcacgaaaagaaaacctttatttccattttttacatttataaaggcactctctt 111
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 13806 aaatgatcacgaaaagaaaacctttatttccatttttcacatttataaaggcactctctt 13865
Query: 112 ctcaattggaatcacaattgcattttgacatatataaagacagcaccttttgttggagga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13866 ctcaattggaatcacaattgcattttgacatatataaagacagcaccttttgttggagga 13925
Query: 172 ggcgagaaaaacagcgaaagacaaggtatattgttcggcgtaaagacttgagaaattgag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13926 ggcgagaaaaacagcgaaagacaaggtatattgttcggcgtaaagacttgagaaattgag 13985
Query: 232 gaaacagggccataacctaaacaacacggatgatcatgttacaagttcctaatgctactt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13986 gaaacagggccataacctaaacaacacggatgatcatgttacaagttcctaatgctactt 14045
Query: 292 gtgagtttggtttgaggccgtatatctcgcccgaagtaaatgcgttaaatccatgcttta 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14046 gtgagtttggtttgaggccgtatatctcgcccgaagtaaatgcgttaaatccatgcttta 14105
Query: 352 tctcctgggtttgcgtcatatttgtggctcacttcatcgccatcggaggcttccagtatg 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14106 tctcctgggtttgcgtcatatttgtggctcacttcatcgccatcggaggcttccagtatg 14165
Query: 412 tatcgttacgaaacaaggagacaggaccggctacttttgaaacaaaacggttctggactt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166 tatcgttacgaaacaaggagacaggaccggctacttttgaaacaaaacggttctggactt 14225
Query: 472 ttag-aatatgagcattttccatgttatacatatgatcaatgttcttttccaaagtggtc 530
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 14226 ttagaaatatgagcattttccatgttatacatatgatcaatgttcttttccaatgtgtac 14285
Query: 531 tattggtaatccaattgaattgggttaaaaattaaccgacatggacctaaggggagcttt 590
||||| |||||||||||| |||||||||| || |||||||||||| ||||| ||||| ||
Sbjct: 14286 tattgttaatccaattgagttgggttaaagatgaaccgacatgga-ctaagtggagcatt 14344
Query: 591 tcattg 596
||||||
Sbjct: 14345 tcattg 14350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8213
Number of Sequences: 1807
Number of extensions: 8213
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)