BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF11FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1348 0.0
>3x_Contig1565
Length = 10922
Score = 1348 bits (680), Expect = 0.0
Identities = 763/778 (98%), Gaps = 11/778 (1%)
Strand = Plus / Plus
Query: 86 ccaggtaataatagcctgagagtctaacaacaattgtagtttaaaactaaagtgatgcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4328 ccaggtaataatagcctgagagtctaacaacaattgtagtttaaaactaaagtgatgcga 4387
Query: 146 agtggttagaaatcaggaactgcccgggaacaaccataaagtgacctatctacgcaagca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4388 agtggttagaaatcaggaactgcccgggaacaaccataaagtgacctatctacgcaagca 4447
Query: 206 cactatatatatattgtatgtacataatgcactacctgctaaaaaggtgggttttaggat 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4448 cactatatatataatgtatgtacataatgcactacctgctaaaaaggtgggttttaggat 4507
Query: 266 agaatgctaaaaaatgaccaaacctgacctaatgcaatggaatttgatttatgaggagga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4508 agaatgctaaaaaatgaccaaacctgacctaatgcaatggaatttgatttatgaggagga 4567
Query: 326 taggaattgggaactggaattggaattacgatctataccccagaagacccagtaacagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4568 taggaattgggaactggaattggaattacgatctataccccagaagacccagtaacagta 4627
Query: 386 tttaggaatggtaagaaataaggtcggcattgagtgagctaccagttctaatgcgaaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4628 tttaggaatggtaagaaataaggtcggcattgagtgagctaccagttctaatgcgaaaag 4687
Query: 446 aaggtccataaaaaaaaacacagactgctaactcgtacaagtcgatcgaaataggtaaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4688 aaggtccataaaaaaaaacacagactgctaactcgtacaagtcgatcgaaataggtaaaa 4747
Query: 506 cctagaaagtctgttactctttgtatttctacttgtcccactacttttgtcagttgtcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4748 cctagaaagtctgttactctttgtatttctacttgtcccactacttttgtcagttgtcaa 4807
Query: 566 tagctgtcacttgttgttcttcgaaataaagaaacaaaaacttgaaaaaaatcgctaaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4808 tagctgtcacttgttgttcttcgaaataaagaaacaaaaacttgaaaaaaatcgctaaga 4867
Query: 626 aatcagtagagaagataactacgaaaagaattgatggatatcagagattactgattggtt 685
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4868 aatcagtagagaagaaaactacgaaaagaattgatggatatcagagattactgattggtt 4927
Query: 686 ntctggttgatcctggaccccacttgactttgatgaaacgtgtagcaacaatgggaccga 745
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4928 ttctggttgatcctggaccccacttgactttgatgaaacgtgtagcaacaat-ggaccga 4986
Query: 746 taaagaaacttgcttgcaaaatttcttttccaggctttttttctttctgcaacccattgg 805
||||||||||||||||| ||||||| ||||||||| ||||||||| |||||| |||||||
Sbjct: 4987 taaagaaacttgcttgc-aaatttc-tttccaggc-ttttttcttcctgcaa-ccattgg 5042
Query: 806 ttccctgcaaaggcctcattttaagactcggggttggggaaaacacacttgaatcatt 863
|||||||||| |||||| ||||||||||||||| ||||||||| ||||||||||||
Sbjct: 5043 -tccctgcaaa-gcctca-tttaagactcggggt--gggaaaaca-acttgaatcatt 5094
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9958
Number of Sequences: 1807
Number of extensions: 9958
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)