BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF11RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1348 0.0
>3x_Contig1771
Length = 25932
Score = 1348 bits (680), Expect = 0.0
Identities = 745/759 (98%), Gaps = 7/759 (0%)
Strand = Plus / Plus
Query: 55 aaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcattagtggat 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18239 aaaaaaacgagtttggagcttctccggaagatgaagaataaagttcaagcattagtggat 18298
Query: 115 gcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagttatcctag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18299 gcattctttggttttcggcgtattcagtatctgtgagactaatttcgatagttatcctag 18358
Query: 175 caattagtatatccaaaggaaggctgtagatataaacaacatgggtggtttcagatttcc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18359 caattagtatatccaaaggaaggctgtagatataaacaacatgggtggtttcagatttcc 18418
Query: 235 aatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagacaatttcaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18419 aatcaagacaaagcttccttcaacgtatttgaatgctagagttatcagagacaatttcaa 18478
Query: 295 gagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcattgctagaaa 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18479 gagacagcaagttgcagacaatgaagtcactgtaaaggcattgaaattcattgctagaaa 18538
Query: 355 tactactctacctccaaggtcgagaatggaagctcagttacaactttctgtgatgcctaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18539 tactactctacctccaaggtcgagaatggaagctcagttacaactttctgtgatgcctaa 18598
Query: 415 ctatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactccagatctgt 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18599 ctatacaagaatgacacaaatcaagaacagatgtattgaaacgggacactccagatctgt 18658
Query: 475 tctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggaaaggtgatct 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18659 tctgagtgatttcagattgtgtagatcgcaattcagagaacttgccaggaaaggtgatct 18718
Query: 535 acctggtgtgaagaaaggtgtatggtagatgcagtttagcatcttttgttccctgatact 594
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18719 acctggtgtgaagaagggtgtatggtagatgcagtttagcatcttttgttccctgatact 18778
Query: 595 gaagttagtaaaagttgggatctttctctcccgcatgcatgtaaatatttttaattaact 654
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18779 gaggttagtaaaagttggaatctttctctcccgcatgcatgtaaatatttttaattaact 18838
Query: 655 caacatatataaaggcttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaa 714
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18839 caacatatataaa-gcttgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaa 18897
Query: 715 gaatgcgcttgggttgtggcaaagcaagtgaccatttattagatggagaaagtgcagtat 774
||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct: 18898 gaa-gcgcttgggttgtggcaaagcaagtga-catttataagat-gagaaagtgcagta- 18953
Query: 775 taggggtgataataatttaaagtttcttaccaaataaaa 813
||| |||||||||| || ||||||||||| ||||||||
Sbjct: 18954 tagtggtgataata--tttaagtttcttacaaaataaaa 18990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7672
Number of Sequences: 1807
Number of extensions: 7672
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)