BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF12FM1.SCF screened BAC_end
(992 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 1086 0.0
3x_Contig203 244 3e-64
>3x_Contig661
Length = 2026
Score = 1086 bits (548), Expect = 0.0
Identities = 560/564 (99%)
Strand = Plus / Plus
Query: 86 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 1522
Query: 146 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 1582
Query: 206 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 1642
Query: 266 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 1702
Query: 326 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 1762
Query: 386 atatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 445
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 agatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 1822
Query: 446 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 1882
Query: 506 aaagtgacattaagagatttacgcaggtgtattatataaaccgttaagataggcgaaatt 565
|||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct: 1883 aaagtgacattaagagatttacgcaggtgtattagagaaaccgttaagaaaggcgaaatt 1942
Query: 566 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 2002
Query: 626 tgtgtgaaaggtagaacctcaaga 649
||||||||||||||||||||||||
Sbjct: 2003 tgtgtgaaaggtagaacctcaaga 2026
>3x_Contig203
Length = 982
Score = 244 bits (123), Expect = 3e-64
Identities = 190/206 (92%), Gaps = 5/206 (2%)
Strand = Plus / Plus
Query: 644 tcaagacattatgtacccggtctgttgagacaaattagaataattaatctagtaactacc 703
||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 tcaagacatta-gtaccgggtctgttgagacaaattagaaaaattaatctagtaactacc 59
Query: 704 aatgtgataggatttacttatcaagatgattcatagggggatcttaaaacgtgaaacatg 763
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 60 aatgtgataggatttacttatcaagatgatacata-ggggatcttaaaacgtgaaacatg 118
Query: 764 aaatggttcacttgtgtagctggcttttacgatcatgaattggacttacatacatttatt 823
||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 119 -aatggatcacttgtgtagctggctttaacgatcatgaa-tggacatacataca-ttatt 175
Query: 824 tttgnttgacgtttattcctatttat 849
| || |||||||| || | |||||||
Sbjct: 176 tctgtttgacgttaatacgtatttat 201
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6898
Number of Sequences: 1807
Number of extensions: 6898
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 992
length of database: 10,358,551
effective HSP length: 16
effective length of query: 976
effective length of database: 10,329,639
effective search space: 10081727664
effective search space used: 10081727664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)