BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF12RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1067 0.0
>3x_Contig826
Length = 2477
Score = 1067 bits (538), Expect = 0.0
Identities = 610/628 (97%), Gaps = 5/628 (0%)
Strand = Plus / Minus
Query: 83 tgttaggatgcttaagtgctggtaagaacatcttactagcacatagcatatagattacgt 142
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 tgttagnatgcttaagtgctggtaagaacatcttactagcacatagcatatagattacgt 2418
Query: 143 agttttaaataacttgagaaaacgaagatgacagagaaggttgaaaaaatagagatgtgt 202
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 agttttaaataacttgaganaacgaagatgacagagaaggttgaaaaaatagagatgtgt 2358
Query: 203 gagaagagagtcggtcaaccagtcaaatgaaatattaatagtacatctttagcctacctt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 gagaagagagtcggtcaaccagtcaaatgaaatattaatagtacatctttagcctacctt 2298
Query: 263 gaatgctggtgtgagattagtagtagtagtgttaccagcggtagttgggtcaatggcagt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 gaatgctggtgtgagattagtagtagtagtgttaccagcggtagttgggtcaatggcagt 2238
Query: 323 tccagtcagggaacttttcgatgagtcggatccgatgctgttcgagacaggactaaggtt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 tccagtcagggaacttttcgatgagtcggatccgatgctgttcgagacaggactaaggtt 2178
Query: 383 gagcgatgagctggacgtggatcctccagggttcattgactggccggattgcgatgttat 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 gagcgatgagctggacgtggatcctccagggttcattgactggccggattgcgatgttat 2118
Query: 443 actgcctctgcctccgcctgcagctctaccgctgtacatgggattgaagttcatattcat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 actgcctctgcctccgcctgcagctctaccgctgtacatgggattgaagttcatattcat 2058
Query: 503 gatcatgttatttgtgaaggatccaccaggggtggtaacgttcgatgatgctgaaagtgg 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 gatcatgttatttgtgaaggatccaccaggggtggtaacgttcgatgatgctgaaagtgg 1998
Query: 563 tggtggtggtggatgcacgggttaataagccattggttgagttggtgaaacgttgcttag 622
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 1997 tggtggtggtggaggcacgggtaaataagccattggttgagttggtgaaacgttgc-tag 1939
Query: 623 tttattcgg-ggtatgttgttgcagttgtcttacctgcggc-gttga-ttggcgaatttg 679
||| |||| ||||||||||||||||||||| | ||||||| ||||| ||| ||| |||
Sbjct: 1938 ttttatcggtggtatgttgttgcagttgtctcaactgcggcggttgagttgcggaaattg 1879
Query: 680 gtggcagtct-cggctgatcggttgctg 706
|||||| || |||||||||||||||||
Sbjct: 1878 gtggcaagctacggctgatcggttgctg 1851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6930
Number of Sequences: 1807
Number of extensions: 6930
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)