BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG01FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 1507 0.0
>3x_Contig640
Length = 3164
Score = 1507 bits (760), Expect = 0.0
Identities = 819/836 (97%), Gaps = 2/836 (0%)
Strand = Plus / Plus
Query: 87 ctacattgggttcattagaagctttattagacttcttaaaagacatgaaaattcctgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 ctacattgggttcattagaagctttattagacttcttaaaagacatgaaaattcctgtta 1189
Query: 147 tgtctgtcggattaggtcctgtttacaagcgtgatataatgaaggcttgtactatgttag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tgtctgtcggattaggtcctgtttacaagcgtgatataatgaaggcttgtactatgttag 1249
Query: 207 aaaaagctcctgaattagcggttatgctatgctttgatgtcaaggttgataaggaagcag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 aaaaagctcctgaattagcggttatgctatgctttgatgtcaaggttgataaggaagcag 1309
Query: 267 aacaatatgctgcagaacaacatatcaaaattttcaatgctgatattatttaccatttat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 aacaatatgctgcagaacaacatatcaaaattttcaatgctgatattatttaccatttat 1369
Query: 327 tcgatgccttcacagcctaccagaaggaactacttgaaaagcgtcgtgctgagtttatcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 tcgatgccttcacagcctaccagaaggaactacttgaaaagcgtcgtgctgagtttatcg 1429
Query: 387 gtgacgctaccttcccatgcgtcctgaacactctacaaatcattaacaagcgtggcccta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1430 gtgacgctaccttcccatgcgtcctgaacactctacaaatcattaacaagcgtggcccta 1489
Query: 447 tgatcattggtgtggatgtcattgaaggttcattgaagatcggtactcctatctgtgcag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1490 tgatcattggtgtggatgtcattgaaggttcattgaagatcggtactcctatctgtgcag 1549
Query: 507 tgaaatatgacccagcaacaaaggagagaataacattgttgcttggtagagtcacttcct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1550 tgaaatatgacccagcaacaaaggagagaataacattgttgcttggtagagtcacttcct 1609
Query: 567 tggaaatcaatcaccaatctgtgactgaagtcaagaagggtcaaaccaatgcaggtgttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1610 tggaaatcaatcaccaatctgtgactgaagtcaagaagggtcaaaccaatgcaggtgttg 1669
Query: 627 caatgcgtttagaagatccttccggtcagcaaccaatctggggtcgtcatgttgatgaaa 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1670 caatgcgtttagaagatccttccggtcagcaaccaatctggggtcgtcatgttgatgaaa 1729
Query: 687 aagatacattgtattctcacatcactagaatgtccattgatacattgaaagatcctgctt 746
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1730 aagatacattgtattctcacatcactagaaggtccattgatacattgaaagatcctgctt 1789
Query: 747 tcagagatcaagttccaaaatctgattggatgttgattcgtaaactaaagccagtctttg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1790 tcagagatcaagttccaaaatctgattggatgttgattcgtaaactaaagccagtctttg 1849
Query: 807 ggatcgaatagttaaataccatttacctggaaattatgtaaaagtggtaaaggacctatc 866
| |||||||||||||||| |||||||||| ||||||||||||||| |||||| || ||||
Sbjct: 1850 gaatcgaatagttaaatagcatttacctgtaaattatgtaaaagttgtaaagtacatatc 1909
Query: 867 tttcttgaacgcaaccttgatcttattgtaagccattgacccattatttttaaaat 922
||||||||||||| || |||| || |||||| || ||||| ||||| || |||||
Sbjct: 1910 -ttcttgaacgcaagctcgatc-tagtgtaaggcaatgaccgattatcttaaaaat 1963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6479
Number of Sequences: 1807
Number of extensions: 6479
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)