BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG01RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1134 0.0
>3x_Contig1772
Length = 25851
Score = 1134 bits (572), Expect = 0.0
Identities = 672/696 (96%), Gaps = 7/696 (1%)
Strand = Plus / Plus
Query: 44 cttgtctgatattgcgcagaagatctgcggaattttcactagcggctggagaatccgctg 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6518 cttgtctgatattgcgcagaagagctgcggaattttcactagcggctggagaatccgctg 6577
Query: 104 tgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6578 tgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgtc 6637
Query: 164 cagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctggag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6638 cagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctggag 6697
Query: 224 cagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6698 cagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtcttg 6757
Query: 284 tgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6758 tgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagcc 6817
Query: 344 aaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttag 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6818 aaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaatttag 6877
Query: 404 aaaacttatgcacaggttcaactaaatgcgagcccactaattctctgacccattctggag 463
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6878 aaaacttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctggag 6937
Query: 464 gctcttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6938 gctcttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaaa 6997
Query: 524 tgtcttttttaagcaactgatttgaatggccaatctacaccaatatccattcttcttcag 583
||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 6998 tgtctttttcaggcaactga-ttgaatggccaatctacaccaatatccattcttctccag 7056
Query: 584 ttacccgttggttctgtcatgaccatcaaagttatcctccctttaccatggacattttca 643
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 7057 tta-ccgttggttctgtcatgaccatcaaagttatcctccc-ttaccatggacaattcag 7114
Query: 644 tttctaaagaaattcgcacgcgggcatttccaggcatttgaaaagcagttctggttat-g 702
| ||||||||||| ||||||||||||| ||||||| ||| ||||||||||| ||||| |
Sbjct: 7115 tatctaaagaaatacgcacgcgggcatcaccaggcaattggaaagcagttct-gttatag 7173
Query: 703 aaacttcctggccactgggctttaatttcttcttga 738
|||||| ||||||||||| | ||| |||||||||||
Sbjct: 7174 aaactt-ctggccactggtc-ttagtttcttcttga 7207
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8471
Number of Sequences: 1807
Number of extensions: 8471
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)