BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG02RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1292 0.0
>3x_Contig1210
Length = 6392
Score = 1292 bits (652), Expect = 0.0
Identities = 720/738 (97%), Gaps = 4/738 (0%)
Strand = Plus / Minus
Query: 49 aggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaaccct 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5461 aggtgaataaattgtgagacaaagaaaaaaaagtaagaagagaaaaagttgtaaaaccct 5402
Query: 109 tcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttcggtt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5401 tcagtaatactaaaagagtcatcaaagaaaccgtgtcctaccacgtcaatagtttcggtt 5342
Query: 169 aacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggtagatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5341 aacatctttaattaaaatgggaggttggtcataacaaatatcattatatcttggtagatt 5282
Query: 229 ttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtctgggc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5281 ttcgatggaactttatcattcttctcgaacggaaggaactaaagagagtagtgtctgggc 5222
Query: 289 atgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcaccacctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5221 atgtttcaatgatatcgtatctctcagctaattacacttattgctttggttcaccacctt 5162
Query: 349 gttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtttgta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5161 gttggttagaagcgtcgttcttgtacatttgttcgaacaacttcatggaagcggtttgta 5102
Query: 409 attcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaactctag 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 attcttcagtcttggtcttcaactcttcagcgtcgacttcttcaccggcttgaactctag 5042
Query: 469 cgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttgtcca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 cgaccaattctctcaaagcagcgacttggtccttaaccttttgagcttcagccttgtcca 4982
Query: 529 atttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcacccttgt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4981 atttttcttcgaattccttcaaagaagcttcggtatcgttggccaattggtcacccttgt 4922
Query: 589 tggccgtttcaatagccttctttctgggttcatcttgttctctgaacttttcagcattcg 648
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 4921 tggcggtttcaatagccttctttctggtttcatcttgttctctgaacttttcagca-tcg 4863
Query: 649 ct-accatttgctcgatttcagattcggac-aacccgnagaaccagcaacagtgatggga 706
|| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||| |
Sbjct: 4862 ctaaccatttgctcgatttcagattcggacaaaccggaagaaccagcaacagtgatggaa 4803
Query: 707 gcattcttgttggaagccttgtcttta-canaaaacgtgatgatcccatcggcatcaata 765
|||| ||||||||||||||||||| || || | | ||||||| |||||||||||||||
Sbjct: 4802 gcatccttgttggaagccttgtctctagcagagacgttgatgataccatcggcatcaata 4743
Query: 766 tccaaagaaacttcgatt 783
|| |||||||||||||||
Sbjct: 4742 tcgaaagaaacttcgatt 4725
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8243
Number of Sequences: 1807
Number of extensions: 8243
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)