BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG03FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig88 1148 0.0
>3x_Contig88
Length = 1299
Score = 1148 bits (579), Expect = 0.0
Identities = 639/653 (97%), Gaps = 7/653 (1%)
Strand = Plus / Minus
Query: 86 tagaaaaatggataacagctctatttgatcttactttgccgttcggaaattatgatttca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tagaaaaatggataacagctctatttgatcttactttgccgttcggaaattatgatttca 617
Query: 146 cttcgatcaaggttcccgaatttgtggcttgcattcctagcaccaatgatacaggtacaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cttcgatcaaggttcccgaatttgtggcttgcattcctagcaccaatgatacaggtacaa 557
Query: 206 tcattgtcagacgacagagtaccttaaatgaaacccttatccctaaaacaattcgagatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcattgtcagacgacagagtaccttaaatgaaacccttatccctaaaacaattcgagatt 497
Query: 266 catccg--tgttaac-ct-caatatcatcc--attttgt-ccatcaaaagagcaacacca 318
||| || ||||| | || ||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 496 catgcgcgtgttagcgctgcaatatcatgcgcattttgtgccatcaaaagagcaacacca 437
Query: 319 aatgaattaaatttggtgttgcaattagataaaagaaagactaatgaagataatatcgtc 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatgaattaaatttggtgttgcaattagataaaagaaagactaatgaagataatatcgtc 377
Query: 379 tcgatcaagaacgtcattttagctttgacttggaagttttctacttttaactgctgtatt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcgatcaagaacgtcattttagctttgacttggaagttttctacttttaactgctgtatt 317
Query: 439 gttgatgttgaaggaatggtcatcaattgcggaactgctaacgatgttctcaattcgttg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttgatgttgaaggaatggtcatcaattgcggaactgctaacgatgttctcaattcgttg 257
Query: 499 gctggtccgataaaaagtaatggtaatcaaccattctctccagatcttttacaccaatta 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gctggtccgataaaaagtaatggtaatcaaccattctctccagatcttttacaccaatta 197
Query: 559 tggtatcggcaaaaacagaaaatatgcaaaaatgttggggttgttgttttatcaaactca 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tggtatcggcaaaaacagaaaatatgcaaaaatgttggggttgttgttttatcaaactca 137
Query: 619 tccatggagaatggtaaatcatgtctttttagcgattatcgaatattcgctgatgcaagc 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 136 tccatggagaatggtaaatcatgtctttttagcgattatcgaatattcgctgatgcaggc 77
Query: 679 atacggcatccaaatgaattaaaaataaaagtaggctttctgaatgtagatta 731
| |||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 76 aaacggcatccaaatgaatttaatataaaagtaggctttctgaatgtagatta 24
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7767
Number of Sequences: 1807
Number of extensions: 7767
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)