BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG03RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig563 783 0.0
3x_Contig185 184 2e-46
>3x_Contig563
Length = 1285
Score = 783 bits (395), Expect = 0.0
Identities = 553/594 (93%), Gaps = 9/594 (1%)
Strand = Plus / Minus
Query: 320 cgtgcgcgtgcgcacgcgggaggttccgaatgtttttgattttgggcttcgcgaagccca 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cgtgcgcgtgcgcacgcgggaggttccgaatgtttttgattttgggcttcgcgaagccca 1226
Query: 380 aaaaccaattaattgattaaattaaaaaaaaataaaaagtgtttaacacacaggggctcc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 aaaaccaattaattgattaaattaaaaaaaaataaaaagtgtttaacacacaggggctcc 1166
Query: 440 gccgggaatcgaacccgggacctcccgcaccctaagcggaaatcatacctctagaccacg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 gccgggaatcgaacccgggacctcccgcaccctaagcggaaatcatacctctagaccacg 1106
Query: 500 aagccatttangtcaaattttgggagtttgactgttctctgaagtgatcagcacgcaaca 559
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aagccatttaggtcaaattttgggagtttgactgttctctgaagtgatcagcacgcaaca 1046
Query: 560 gggctggagaaatactagaaacagtaatcgcgtagctcggatgatttatagtgagtgtca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 gggctggagaaatactagaaacagtaatcgcgtagctcggatgatttatagtgagtgtca 986
Query: 620 tgaataatcacgtaccacaactgatttagataattgtcgtttttctcctcactgttactt 679
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 985 tgaataatcacgtaccacaactgatttagataattgtcgttttcttcctcactgttactt 926
Query: 680 tgaatttagcggagattgttattggtttgcctcatt-tgggacataaagagacttt-taa 737
||||| |||||||||||||||| | ||||| ||||| ||| ||||||||||||||| ||
Sbjct: 925 tgaatatagcggagattgttatggttttgcatcattatggaacataaagagactttagaa 866
Query: 738 gtggt-aaatgagaaaagga-ttccaggattgaaataa-gccctactagtcattc-accc 793
||| | |||||||||||||| ||| ||||| || |||| || ||||||||||||| |||
Sbjct: 865 gtgataaaatgagaaaaggagttcgaggatagagataatgctctactagtcattcaaccg 806
Query: 794 aaacttggc-accccaa-gtttacaaatcaaacaat-ttgggttgagcttggtaaaaaaa 850
||||||||| ||| ||| |||||||||||||||||| ||| || ||||||||| | ||
Sbjct: 805 aaacttggcaaccacaatgtttacaaatcaaacaatattgtgtgtagcttggtagtagaa 746
Query: 851 ttggtgccggatttgtggcttaaagtccccaggagggcaaaaaaaaaatttaaa 904
|| || | ||||||| ||||||||| | ||||||| |||||||||| |||||
Sbjct: 745 tttgttgctgatttgttgcttaaagtacacaggaggcaaaaaaaaaaaattaaa 692
>3x_Contig185
Length = 1072
Score = 184 bits (93), Expect = 2e-46
Identities = 96/97 (98%)
Strand = Plus / Minus
Query: 39 acaacctttagcttcttttttttttaaattagtattcatatttcaaaatttagacatttc 98
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 acaagctttagcttcttttttttttaaattagtattcatatttcaaaatttagacatttc 38
Query: 99 agccatccttgtcggctccttgataagaattaatcgg 135
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 agccatccttgtcggctccttgataagaattaatcgg 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,092
Number of Sequences: 1807
Number of extensions: 10092
Number of successful extensions: 164
Number of sequences better than 1.0e-20: 2
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)