BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG04RM1.SCF screened BAC_end
(998 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1515 735 0.0
>3x_Contig1515
Length = 8855
Score = 735 bits (371), Expect = 0.0
Identities = 424/435 (97%), Gaps = 5/435 (1%)
Strand = Plus / Minus
Query: 47 cttatcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatcc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 cttatcataattcttcaaatcaactttatgttctaatgaaccttgctttcctacgaatcc 2966
Query: 107 agcaatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 agcaatatatttaatcatttccattttatccatagtactaaagtttcgtttgttgatctc 2906
Query: 167 tactgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2905 tactgcaaattttactggcaccatctcctctttgtggaagtgctgtggtagtactcgttc 2846
Query: 227 acaaagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2845 acaaagttttgccaattcttccatactggcatgacatgaatcggtaattggtgttagttt 2786
Query: 287 ctgcacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2785 ctgcacaaatcttgttcttttcctcaagtcatgtggatcggctagatctctgatgattct 2726
Query: 347 atgaacaaaacttttctggaacaatccgtttttcgggtcttcacaaagactagacactca 406
|||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 2725 atgaac-aaacttttctggaacaat-cggttttcgggtcttcacaaagactagacactca 2668
Query: 407 gtcttgaagtcgagctgctccaataatgggtttgtttttttttggtatcgactattggta 466
|||| | |||||||||||||||| || |||||| ||||||||||||||||||| |||||
Sbjct: 2667 gtctgaaggtcgagctgctccaat-attggtttg-ttttttttggtatcgacta-tggta 2611
Query: 467 gttttatgggttttt 481
||||||||| |||||
Sbjct: 2610 gttttatggtttttt 2596
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,804
Number of Sequences: 1807
Number of extensions: 24804
Number of successful extensions: 3022
Number of sequences better than 1.0e-20: 1
length of query: 998
length of database: 10,358,551
effective HSP length: 16
effective length of query: 982
effective length of database: 10,329,639
effective search space: 10143705498
effective search space used: 10143705498
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)