BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG05FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1235 0.0
>3x_Contig1791
Length = 39945
Score = 1235 bits (623), Expect = 0.0
Identities = 700/719 (97%), Gaps = 5/719 (0%)
Strand = Plus / Minus
Query: 86 ctctggtgtgttgacctccaattgagtttttcatgccagactctgcaaaggaagaggtag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18070 ctctggtgtgttgacctccaattgagtttttcatgccagactctgcaaaggaagaggtag 18011
Query: 146 atctacgcaacgttccgacacgacttccaaccaattctgaactatgagaacgagaaattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18010 atctacgcaacgttccgacacgacttccaaccaattctgaactatgagaacgagaaattg 17951
Query: 206 gcgtgagacccaagatttctcttgaatgctttctcgatgttgatttcgatgatctggagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17950 gcgtgagacccaagatttctcttgaatgctttctcgatgttgatttcgatgatctggagc 17891
Query: 266 gcgatctataacgcgacacagatccagatctattgccagaacagatcgacgctgcgtccg 325
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17890 gcgatctagaacgcgacacagatccagatctattgccagaacagagcgacgctgcgtccg 17831
Query: 326 gtgtggataaaacattatttatctgcaccttttgtttcaaaattgcgctatgtccatcct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17830 gtgtggataaaacattatttatctgcaccttttgtttcaaaattgcgctatgtccatcct 17771
Query: 386 tcaattcctcggttcctctgtctgtcttcggtacgggtttaagatgtaaccagctcctaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17770 tcaattcctcggttcctctgtctgtcttcggtacgggtttaagatgtaaccagctcctaa 17711
Query: 446 gttttgatgatttgttcccactggcaatggtatcagtagttgtcgaaagtgtacttccgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17710 gttttgatgatttgttcccactggcaatggtatcagtagttgtcgaaagtgtacttccgc 17651
Query: 506 tgctattgttgttgtgctgaatgctaaacctcaaagattgggttgagggtgaacggatcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17650 tgctattgttgttgtgctgaatgctaaacctcaaagattgggttgagggtgaacggatcc 17591
Query: 566 tattgctatgattcaaatcattcctcaaattgaccgtatgatcttgttcgtcgttaggtt 625
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 17590 tattgctatgattcaaatcattcctcaaattgaccgtaggatcttgttcgtcgttaggtt 17531
Query: 626 tagagaaaggggaagaggcccgcagtcgtaagtcatgtaaactactcacacgatgtttaa 685
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17530 tagagaaaggggaagaggcccgcagtcgtaagtcaggtaaactactcacacgatgtttaa 17471
Query: 686 agcggcgaagtcctggaaatgatgatttccttccactgcttggctggggccttccttctt 745
||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 17470 ggcgtcgaagtcctggaaatgatgatttccttccactgctt-gctggtgcc-tccttctc 17413
Query: 746 cttttctggcttggtccgttgggatttgcttcctcacatcctccccaaaaatatttctt 804
||| || |||| |||||||| ||||||| || ||||||||| |||||| |||||||||
Sbjct: 17412 cttctcatgctt-gtccgttgtgatttgc-tcttcacatcct-cccaaagatatttctt 17357
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6133
Number of Sequences: 1807
Number of extensions: 6133
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)