BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG05RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1148 0.0
>3x_Contig1049
Length = 4107
Score = 1148 bits (579), Expect = 0.0
Identities = 636/655 (97%)
Strand = Plus / Plus
Query: 44 cttgtttggatcgaatgtggtatgcatcagttcactttccaacgttaatcgaggttcctt 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 3303 cttgtttggatcgaatgtggtaagcatcagttcactttccaacgttaatcgaggttcctt 3362
Query: 104 tatttttgtatctaaggtggtcatatgaatctattattagttgaaatatttcaaagtcag 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 tatttttgtatctaaggtggtcatatgaatctattattagttgaaatatttcaaagtcag 3422
Query: 164 ttcaaatgactgtcacgtgagagaatgatctattttagtttcgcagcacgatggatgcca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3423 ttcaaatgactgtcacgtgagagaatgatctattttagtttcgcagcacgatggatgcca 3482
Query: 224 ccgtgaacctccacgcatacactgaaagcaactcggaagttaataagccactatcgatcc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3483 ccgtgaacctccacgcatacactgaaagcaactcggaagttaataagccactatcgatcc 3542
Query: 284 aatagattcatcaacaggtttgttctcgagagctttttcgcgtttgtgtttgttcgagtt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3543 aatagattcatcaacaggtttgttctcgagagctttttcgcgtttgtgtttgttcgagtt 3602
Query: 344 ttcaaatttgacacaaaatattcaataaagacgtcagttttatcaatatcgtaatcacta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3603 ttcaaatttgacacaaaatattcaataaagacgtcagttttatcaatatcgtaatcacta 3662
Query: 404 aggatgtctgtccaaaaacaaaacggcttgaacctgaaactaaacttatgaatagccaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3663 aggatgtctgtccaaaaacaaaacggcttgaacctgaaactaaacttatgaatagccaat 3722
Query: 464 agttcagagtaatttcaaccaagtcatcaactatacaatgagtaaacccaggcttggata 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3723 agttcagagtaatttcaaccaagtcatcaactatacaatgagtaaacccaggcttggaaa 3782
Query: 524 ttcgaataagttgccacatgctctttggcggcagtttctagatgaaaattcgagcaccac 583
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 3783 tccgaataagttgccacatgctcttgggcggcagtttctagatgaaaattcgagcacaac 3842
Query: 584 gacagatagcgaaaaagagagttttgacttcccagcattgatgatgaagctgaaaggaac 643
||||||||||||||||||||||||||||||| |||||||||||| || | |||||| |||
Sbjct: 3843 gacagatagcgaaaaagagagttttgacttcacagcattgatgaagaggttgaaagaaac 3902
Query: 644 ccagaagactacattgcccagaagaaatcccagggaatatttgtggcccactact 698
| |||||||||| |||| ||||||||| ||| |||| |||||| | ||||||||
Sbjct: 3903 caggaagactacaatgccaagaagaaataccaaggaaaatttgttggccactact 3957
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8221
Number of Sequences: 1807
Number of extensions: 8221
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)