BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZG06RM1.SCF screened BAC_end
         (907 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                         872   0.0  

>3x_Contig1640 
          Length = 15521

 Score =  872 bits (440), Expect = 0.0
 Identities = 452/456 (99%)
 Strand = Plus / Minus

                                                                       
Query: 43  attaacatctttcaaatctttatctaatgactgtagaatcttgaacacaacatcattatt 102
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 attaacatctgtcaaatctttatctaatgactgtagaatcttgaacacaacatcattatt 397

                                                                       
Query: 103 atttttgttcttctctaatcctttgacggcttctaaaacgtccttggtttccatatccgc 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atttttgttcttctctaatcctttgacggcttctaaaacgtccttggtttccatatccgc 337

                                                                       
Query: 163 agaagatatctcagtttctatctatattccaggatcaatttctttcgaagatgaagaatg 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaagatatctcagtttctatctatattccaggatcaatttctttcgaagatgaagaatg 277

                                                                       
Query: 223 aatgttaataatacacagcaaatattgctctcaacagattctaatgagttaggacctgct 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aatgttaataatacacagcaaatattgctctcaacagattctaatgagttaggacctgct 217

                                                                       
Query: 283 gaaatccaccatttggacaatggacagtgttgattgtttgaagtcattaattagttttca 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaaatccaccatttggacaatggacagtgttgattgtttgaagtcattaattagttttca 157

                                                                       
Query: 343 attctaatttcatttcattcgaacattgaaaaaaaaattagaattgaagttgatgacgaa 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 attctaatttcatttcattcgaacattgaaaaaaaaattagaattgaagttgatgacgaa 97

                                                                       
Query: 403 agttgaagaatcgaacaataaagccatatctgagttttattacacttataaagtaccgct 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  agttgaagaatcgaacaataaagccatatctgagttttattacacttataaagtaccgct 37

                                               
Query: 463 aagagcatcgatagacttgtaagacagactttcacc 498
           |||||||||||  |||||||||||||||||| ||||
Sbjct: 36  aagagcatcgaaggacttgtaagacagacttccacc 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9720
Number of Sequences: 1807
Number of extensions: 9720
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)