BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG07FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1236 1243 0.0
>3x_Contig1236
Length = 4331
Score = 1243 bits (627), Expect = 0.0
Identities = 680/690 (98%), Gaps = 6/690 (0%)
Strand = Plus / Minus
Query: 87 cctctcactacagcatcaagtccgaatttgcctatggcaaataatcctaactcaaaggat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3731 cctctcactacagcatcaagtccgaatttgcctatggcaaataatcctaactcaaaggat 3672
Query: 147 tcaagaattaggtctaagcagtccactccccagagtgcaccaccactaggtgaaaaagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 tcaagaattaggtctaagcagtccactccccagagtgcaccaccactaggtgaaaaagaa 3612
Query: 207 aaggttacaactcaaactcccacacagagaaatacgaaaccggctaataaacgtgaaatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611 aaggttacaactcaaactcccacacagagaaatacgaaaccggctaataaacgtgaaatc 3552
Query: 267 attgaaggatatgccaaaaaaatactttttcagaaacccaatttcactccagaacttgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3551 attgaaggatatgccaaaaaaatactttttcagaaacccaatttcactccagaacttgct 3492
Query: 327 ctaatggctgctgaaaatatttacaggagcttgccattgtctgatcaacaaaggaaaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3491 ctaatggctgctgaaaatatttacaggagcttgccattgtctgatcaacaaaggaaaact 3432
Query: 387 gtaatttatgacaatgttgcacaaccgaaagtgcgtccaccagagatgaaacattcttct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3431 gtaatttatgacaatgttgcacaaccgaaagtgcgtccaccagagatgaaacattcttct 3372
Query: 447 ccgacgcctcaagagattttgcaacgtgctcagaaaaagtgaatacaattaataatatat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3371 ccgacgcctcaagagattttgcaacgtgctcagaaaaagtgaatacaattaataatatat 3312
Query: 507 aatcagttcataatcacaacattgattcaagcaaagaattacgaataatgagtccttttg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 aatcagttcataatcacaacattgattcaagcaaagaattacgaataatgagtccttttg 3252
Query: 567 ttataatcattatttcaatatatatatgtatgtaaattcaaacatttgggaaagtgntaa 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3251 ttataatcattatttcaatatatatatgtatgtaaattcaaacatttgggaaagtgtaaa 3192
Query: 627 cagcagattccttcttt-gtacgccgttggctttgtaagatactttccatttcactctga 685
|||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3191 cagcagattcctcctttggtacgccgttggctttgtaggatactttccatttcactctga 3132
Query: 686 gtggcttttggggcattcttcactgcgtttatcaatccaacttttttgatggatttccat 745
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 3131 gtggc-tttggggcattcttcactgcg-ttatcaatccaacttttttgatgga-ttccat 3075
Query: 746 cctttgcataggaatgac-aaacagtattt 774
|||||||||||| ||||| |||||||||||
Sbjct: 3074 cctttgcatagg-atgacaaaacagtattt 3046
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8825
Number of Sequences: 1807
Number of extensions: 8825
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)