BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG08FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1326 0.0
3x_Contig1511 359 7e-99
>3x_Contig1663
Length = 13533
Score = 1326 bits (669), Expect = 0.0
Identities = 763/785 (97%), Gaps = 7/785 (0%)
Strand = Plus / Plus
Query: 86 aaacgtacgaagaataggaaaccgcacgagaaagaagtcacggaatcaagaaatgctcct 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9720 aaacgtacgaagaataggaaaccgcacgagaaagaagtcacggaatcaagaaatgctcct 9779
Query: 146 cgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9780 cgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaat 9839
Query: 206 aaagatactttatatgatcttgatgtacttgatgcaatttacaaaggatctccgggttac 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9840 aaagatactttagatgatcttgatgtacttgatgcaatttacaaaggatctccgggttac 9899
Query: 266 gaacgaattttcagaccagagaaccgaatagatattggtcatttgttaaaagcgagtaaa 325
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9900 gaacgaattttcagaccagagaaccgaatagatattggtcatttgttaaaagtgagtaaa 9959
Query: 326 cagccacaaagaggaaacgtaaaccgtaatagtgtcgcaaaaccaactttaaacgaatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9960 cagccacaaagaggaaacgtaaaccgtaatagtgtcgcaaaaccaactttaaacgaatct 10019
Query: 386 acgtccgtcctcccacctccaaggacgttggcctggaataatacttactcgatgaagttt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10020 acgtccgtcctcccacctccaaggacgttggcctggaataatacttactcgatgaagttt 10079
Query: 446 catgatccgtctcttcttcagaagtccattaatcatactgtgaagcagttgaagaggtaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10080 catgatccgtctcttcttcagaagtccattaatcatactgtgaagcagttgaagaggtaa 10139
Query: 506 tgatcctgccccgtaacataacgtgaatgatcaatacaagcatcagtttctgtctcatga 565
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10140 tgatcctgccccgtaacataacgttaatgatcaatacaagcatcagtttctgtctcatga 10199
Query: 566 gtatcattcgccgatctgaggtgggtttgtactcatgtatctggtgcattagtatacagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10200 gtatcattcgccgatctgaggtgggtttgtactcatgtatctggtgcattagtatacagc 10259
Query: 626 tatatatcccaatcaagtgttcacgtgactcatcaccactaacgaaccaataaatatcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10260 tatatatcccaatcaagtgttcacgtgactcatcaccactaacgaaccaataaatatcat 10319
Query: 686 gctcgtattatatgatttatatgcaccaagaaaatctgaggttcaaa-gtttaattcgga 744
| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 10320 gttcgtattatatgatttatatgcaccaagaaaat-tgaggttcaaaggtttaatt-gga 10377
Query: 745 atgaagattccgctagtgcagcgaatagacaccggtaacttataaatggaaagtctttag 804
|||||||||||| ||||| ||||||||||||||||||||||||||||| | || |||||
Sbjct: 10378 atgaagattccgttagtg-agcgaatagacaccggtaacttataaatgaagtgt-tttag 10435
Query: 805 actaccctaagggaagcacaagaaaatgttccttaatggttcagagcccgtaccatggac 864
|||| |||| || |||||||||||| |||| | |||| |||||||| ||||||||| |||
Sbjct: 10436 actagcctagggaaagcacaagaaagtgttacataat-gttcagag-ccgtaccattgac 10493
Query: 865 cttaa 869
|||||
Sbjct: 10494 cttaa 10498
>3x_Contig1511
Length = 8569
Score = 359 bits (181), Expect = 7e-99
Identities = 207/213 (97%), Gaps = 2/213 (0%)
Strand = Plus / Minus
Query: 86 aaacgtacgaagaataggaaaccgcacgagaaagaagtcacggaatcaagaaatgctcct 145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaacgtacgaagaataggaaaccgcacgagaaagaagtcacggaatcaagaaatgctccc 154
Query: 146 cgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cgatgcgtgatacattgtccgacgaataggaggaaacgcatgatgaaaataacgaagaat 94
Query: 206 aaagatactttatatgatcttgatgtacttgatgcaatttacaaaggatctccgggttac 265
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 93 aaagacactttagatgatcttgatgtacttgatgcaatttacaaaggatctccaggttac 34
Query: 266 gaacgaattttcag-accagaga-accgaatag 296
|||||||||||||| |||||||| |||||||||
Sbjct: 33 gaacgaattttcagcaccagagagaccgaatag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5543
Number of Sequences: 1807
Number of extensions: 5543
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)