BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1432 1116 0.0
>3x_Contig1432
Length = 8634
Score = 1116 bits (563), Expect = 0.0
Identities = 727/771 (94%), Gaps = 8/771 (1%)
Strand = Plus / Minus
Query: 46 ctttaccaatcttgaaacgggctttggatatgggacattccaatcaccgccgaaacttgc 105
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 1820 ctttaccaatcttgaaacgggctaaggatatgggac-ttccaatcaccgccgaaacttgc 1762
Query: 106 ttccattatctttcattggcagctgaaagggttcctaaatccaagactttttacaaatgt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1761 ttccattatctttcattggcagctgaaagggttcctaaatccaagactttttacaaatgt 1702
Query: 166 tgtccaccgatacgtagtgagaagaacagaaaggaactttggagagccttaagagaaggt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1701 tgtccaccgatacgtagtgagaagaacagaaaggaactttggagagccttaagagaaggt 1642
Query: 226 ctaatcacttctgtagtaagtgaccattctccatgtataccggagctaaaagacctcgca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ctaatcacttctgtagtaagtgaccattctccatgtataccggagctaaaagacctcgca 1582
Query: 286 aaaggtgatttttttagtgcatggggaggaattgcatccgtcgggttgggactaccatta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 aaaggtgatttttttagtgcatggggaggaattgcatccgtcgggttgggactaccatta 1522
Query: 346 ctatactctaacggtgcttccatcgactgaatatcattcaatggtgttgcgagaacacca 405
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1521 ctatacactaacggtgcttccatcg-ctgaa-atcattcaatggtgttgcgagaacacca 1464
Query: 406 gtaagcaagttggtcttgatcacaggaagggtttcctaagaactggatacgacgcagatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 gtaagcaagttggtcttgatcacaggaagggtttcctaagaactggatacgacgcagatt 1404
Query: 466 ttgttatcttcgacatcaatacctatcatactgtcgacaacgataaagtttatttcaaaa 525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1403 ttgttatcttcgacatcaatacctatcagactgtcgacaacgataaagtttatttcaaaa 1344
Query: 526 acaaactgacagcctatgatgggttcaaactgaaatgtttagtgagaaacacctatgtta 585
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1343 acaaactgacagcctatgatgggttcaaactgaaaggtttagtgagaaacacctatgtta 1284
Query: 586 gaggaaaattggcttttgaacttgacggcatgggacataat-taaaccct-ccagccata 643
||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| |
Sbjct: 1283 gaggaaaattggcttttgaacttgacggcatgggacataataaaaaccctcccggccaga 1224
Query: 644 caatttttgatcgca-tattacatgaattaccccatctttctatcattttttttttttca 702
||||| |||| |||| | ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 1223 caattcttgaacgcagaagaacatgaagtaccccatcttctaatcatttttttttcttca 1164
Query: 703 attttgaatttgcctttatttgatgcatgattttcctattttttttatttcacttattga 762
|||||||| || ||||||||||||||||||| | | |||| | | ||| ||||||||
Sbjct: 1163 attttgaa-ttacctttatttgatgcatgatatacatattatatatatatcacttatgat 1105
Query: 763 ttaaatttacctaaaattaccttcatttatataatttcctaaaacagcaat 813
||||||||||||| ||| ||||||| |||||||| ||| |||||||||
Sbjct: 1104 ttaaatttacctagaatatacttcattattataattt-ctagaacagcaat 1055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,172
Number of Sequences: 1807
Number of extensions: 14172
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)