BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG09RM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1170 0.0
>3x_Contig1772
Length = 25851
Score = 1170 bits (590), Expect = 0.0
Identities = 679/704 (96%), Gaps = 4/704 (0%)
Strand = Plus / Plus
Query: 44 cttgtctgatattgcgcagaagagtctgcggaatttt-actagcggctggagaatccgct 102
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 6518 cttgtctgatattgcgcagaagag-ctgcggaattttcactagcggctggagaatccgct 6576
Query: 103 gtgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6577 gtgttcccagcgcgagctgaatcttgagttatagaaccatagttcccagtagaggattgt 6636
Query: 163 ccagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctgga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6637 ccagcaggtgcggtaccggcttctccagctgcttcttcgatatcgtaggagttccctgga 6696
Query: 223 gcagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtctt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6697 gcagccaactcttcatcttcagtgtcctcatattcgtcttcatcatctcttccaggtctt 6756
Query: 283 gtgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6757 gtgatattgatgtgagttgggatggcgggtttcctgatatcaacatccatttgaggtagc 6816
Query: 343 caaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaattta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6817 caaaatggaatagaactgactctgtcgttgagaagtgacgcgacaccgtgaatgaattta 6876
Query: 403 gaaaacttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctgga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6877 gaaaacttaggcacaggttcaactaaatgcgagcccactaattctctgacccattctgga 6936
Query: 463 ggctcttgacccatttgagtttgtagtttgactttcaaaacagcgtaaaggaatctacaa 522
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 6937 ggctcttgacccatttgagtttgtagtttgacttccaaaacagcgtaagggaatctacaa 6996
Query: 523 atgttctttttcaagcaactgatttgatgggcaatctacaccaatatccattcctctnca 582
||| ||||||||| |||||||||| |||| |||||||||||||||||||||| ||| ||
Sbjct: 6997 atg-tctttttcaggcaactgattgaatggccaatctacaccaatatccattcttctcca 7055
Query: 583 gttaccgttgggttctgtcatgaacatcaaagttattctnccttaccatggacattttag 642
||||||||| ||||||||||||| |||||||||||| || |||||||||||||| || ||
Sbjct: 7056 gttaccgtt-ggttctgtcatgaccatcaaagttatcctcccttaccatggacaattcag 7114
Query: 643 tttcttaagaaatacgcacgcgggcattaccaggcaattgaaaagcagttctgttattga 702
| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| ||
Sbjct: 7115 tatctaaagaaatacgcacgcgggcatcaccaggcaattggaaagcagttctgttataga 7174
Query: 703 accttctggccactggtcttagtttctttttgagcattggatac 746
| |||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 7175 aacttctggccactggtcttagtttcttcttgagcattgtatac 7218
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8439
Number of Sequences: 1807
Number of extensions: 8439
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)