BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG10FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1197 0.0
>3x_Contig1720
Length = 19870
Score = 1197 bits (604), Expect = 0.0
Identities = 668/687 (97%), Gaps = 2/687 (0%)
Strand = Plus / Minus
Query: 86 aaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagtgttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 aaattgggaacgctattaaatttggatcgagcatttgcatatgccaaatttgcagtgttt 2185
Query: 146 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 tgatatgagcgataacttttaactcttggctgctgtatttctaagtgttccatgctgcta 2125
Query: 206 ttattgaagttcatattttcacttatgaaatgattcataccattattcatatgcatgttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 ttattgaagttcatattttcacttatgaaatgattcataccattattcatatgcatgttc 2065
Query: 266 atagccataagtgactgatattctttaaaactctttggatggtttggattaatgggggtt 325
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2064 atagccataagtgactgatattctttaaaactctttggatggtttggagtaatgggggtt 2005
Query: 326 attacttgaggcatcgatgcccgggattcaaaatacgtgagaaacaatagcattgtcacg 385
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2004 attacttgaggcatcgatgcccgggattcaaaa-acgtgagaaacaatagcattgtcacg 1946
Query: 386 ctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ctcaaacccgtccactgacctggcatgtttctttcgacctcctttctcatttatgaaaaa 1886
Query: 446 agaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgcaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 agaattacggtcagatgtggagtaattggaatgctcgaatgcgttaccattctctgcaag 1826
Query: 506 atcgaaatcataccaatttggaattgaagaaacttttacatcttggactcctcgctcttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 atcgaaatcataccaatttggaattgaagaaacttttacatcttggactcctcgctcttt 1766
Query: 566 atgaatattctcatattcaggagaaacttgatatacactttcacgggttgtactgagatg 625
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 1765 atgaatattctcatattcaggagaaacttgatatacacttccacgggttgtactgaaatg 1706
Query: 626 atgctgattgacattttcacggaatgcatgctcaaaattattgaatccaaactcttncgt 685
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 1705 aggctgattgacattttcacggaatgcatgctcaaaataattgaatccaaactcttccgt 1646
Query: 686 atctaaatttctggcaattcgcttctcattttctggaagtgaaactttcttgaatgcttt 745
|| |||||||||| |||||||||||||| |||||||||||||| || ||| | ||| |
Sbjct: 1645 atttaaatttctgtcaattcgcttctca-tttctggaagtgaacctgtctgaattgcgta 1587
Query: 746 aggaactttcaaggcctataacccttg 772
||||||||||||| |||| ||||||||
Sbjct: 1586 aggaactttcaagtcctagaacccttg 1560
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8205
Number of Sequences: 1807
Number of extensions: 8205
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)