BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG11FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1650 1411 0.0
>3x_Contig1650
Length = 11257
Score = 1411 bits (712), Expect = 0.0
Identities = 812/843 (96%), Gaps = 2/843 (0%)
Strand = Plus / Plus
Query: 86 attaattatcacttcaacatccatgctaacccataaagactctaacagagaaaatcttag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9621 attaattatcacttcaacatccatgctaacccataaagactctaacagagaaaatcttag 9680
Query: 146 acagttttctaatttgtagtcacttatttgaaccaagaaaaacctacagcttgaaaactc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9681 acagttttctaatttgtagtcacttatttgaaccaagaaaaacctacagcttgaaaactc 9740
Query: 206 atccttcacatgttttattcaattgaaactgatttctgattaaatcaaaggtttccagga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9741 atccttcacatgttttattcaattgaaactgatttctgattaaatcaaaggtttccagga 9800
Query: 266 ttggagcagagctcccttattcagcaattcaagatcctcgaaagattttttttttgaaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 ttggagcagagctcccttattcagcaattcaagatcctcgaaagattttttttttgaaag 9860
Query: 326 tagaaagtcccccagttcgaaacccacgtatctcttaacaataattttatctgtaaaatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 tagaaagtcccccagttcgaaacccacgtatctcttaacaataattttatctgtaaaatt 9920
Query: 386 tcttttcgattgacgagagatatggaaaactttaaagcgatgagatgagatgagatgaga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 tcttttcgattgacgagagatatggaaaactttaaagcgatgagatgagatgagatgaga 9980
Query: 446 tgagagtaggatgagattacatgaaaggagattattttaggtttgggtttggctagcgca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 tgagagtaggatgagattacatgaaaggagattattttaggtttgggtttggctagcgca 10040
Query: 506 tgtgttacataactttaaacagagtctggattcagataagttgaaaacaattaaaattta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10041 tgtgttacataactttaaacagagtctggattcagataagttgaaaacaattaaaattta 10100
Query: 566 aggcatttcctgtttcattttgtaattgatatcacaagttccacaattaacagtattctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10101 aggcatttcctgtttcattttgtaattgatatcacaagttccacaattaacagtattctt 10160
Query: 626 ataaactgaaaggatcatacacatcatggttctgtctagtaattggttaagcttacagaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10161 ataaactgaaaggatcatacacatcatggttctgtctagtaattggttaagcttacagaa 10220
Query: 686 gagtactgattctgatagcgtgaataagattaatggtgggaagaagacgaaaagttattt 745
||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||
Sbjct: 10221 gagtactgattctgatagcgtgaataagaataagggtggaaagaagacgaaaagtaattc 10280
Query: 746 ctagaagatgacagttttcgtttaaaaagacaaacagtatgtcgacaagaagaaggatga 805
|||||| |||||||| |||| |||||||||||||||||||||||||||||||| | |
Sbjct: 10281 taagaagaggacagtttccgttaaaaaagacaaacagtatgtcgacaagaagaagaagaa 10340
Query: 806 tggtactgggttctagatcatggatatgggtgccaatatgaattggggaatcgctaaagt 865
||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 10341 tggtactgggtctaagatcatggatatggttgccaatatgaatagggaaatcgctaaagt 10400
Query: 866 tgagcatgagatatcg-attattcncatgcggatggtcagatga-taattttgagaatag 923
||||| |||| | || | || | ||||||||||||||||||| ||||| |||| ||||
Sbjct: 10401 agagcaagagagaacgaagaatacccatgcggatggtcagatgattaattctgaggatag 10460
Query: 924 gtt 926
|||
Sbjct: 10461 gtt 10463
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9919
Number of Sequences: 1807
Number of extensions: 9919
Number of successful extensions: 671
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)