BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG11RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig959 1421 0.0
>3x_Contig959
Length = 3065
Score = 1421 bits (717), Expect = 0.0
Identities = 801/821 (97%), Gaps = 6/821 (0%)
Strand = Plus / Minus
Query: 44 cttaccagatggtttagaagtggtaagttttccatgcgtgaaatgtaagaatgttacgta 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2123 cttaccagatggtttagaagtggaaagttttccatgcgtgaaatgtaagaatgttacgta 2064
Query: 104 tagagatcctaatgtgaagccatggcaacgtctggaggctaaacctggacaaaaatgtta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2063 tagagatcctaatgtgaagccatggcaacgtctggaggctaaacctggacaaaaatgtta 2004
Query: 164 tggttgtcacaatggtttcaagagttcaccggcactggttccttgggataagatgaaccc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2003 tggttgtcacaatggtttcaagagttcaccggcactggttccttgggataagatgaaccc 1944
Query: 224 agaaagaatatgcgctggatgcgcttttagattccacacatatcgtgctcgtggatttcg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 agaaagaatatgcgctggatgcgcttttagattccacacatatcgtgctcgtggatttcg 1884
Query: 284 tgcaaggcagaactcgacgaaatcaaggcaacagctttggctaagaatacaattgaactt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 tgcaaggcagaactcgacgaaatcaaggcaacagctttggctaagaatacaattgaactt 1824
Query: 344 acttgtattaaatgcgattcaatagttgaactatttccagctaagtaggggaagtgcgtt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 acttgtattaaatgcgattcaatagttgaactatttccagctaagtaggggaagtgcgtt 1764
Query: 404 acagtaattattgctcatttgatggatctttagtagttgctcatttcatagtttttcaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 acagtaattattgctcatttgatggatctttagtagttgctcatttcatagtttttcaat 1704
Query: 464 aattgcttacacagggaatatttaatatttagttttatcaaccacttctacatcttacaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 aattgcttacacagggaatatttaatatttagttttatcaaccacttctacatcttacaa 1644
Query: 524 cactcggacgatggcttgccgtccgccttgttagcatcttcataatatacagacttgttg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 cactcggacgatggcttgccgtccgccttgttagcatcttcataatatacagacttgttg 1584
Query: 584 aagttgttgtttgcaagtgggacatctagagctgggttacggtcgaagaacgaagctgga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 aagttgttgtttgcaagtgggacatctagagctgggttacggtcgaagaacgaagctgga 1524
Query: 644 gtgatcaagaattgcaagatatcagatgtcatcactgggaattgttcagtgacccgatga 703
||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct: 1523 gtgatcaagaattgcaagaaatcagatgtcatcactgggaattgttcagtgaccggagga 1464
Query: 704 tgtgttagagccaaatttggcc-aacaacgatgtctgtgtttcttacgctttcagaccca 762
||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 1463 tgtgttagagccaaagttggccaaacaacgatgtctgtgtttctaacgctttcagaccca 1404
Query: 763 ttctgccc-aacctttataccggtgtcttcggtccacttggtagggaattcaccaacctg 821
||||||| |||||||| |||||||||||||||| ||| | ||| ||||||||| | |||
Sbjct: 1403 -tctgcccaaacctttagaccggtgtcttcggtcgactggttagtgaattcacc-agctg 1346
Query: 822 catacattctgtctttctggcttacttggggacccaaattt 862
||||||||||||| |||| || ||||||| |||||||||||
Sbjct: 1345 catacattctgtc-ttct-gcgtacttggtgacccaaattt 1307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6298
Number of Sequences: 1807
Number of extensions: 6298
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)