BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZG12FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig665 1074 0.0
>3x_Contig665
Length = 2101
Score = 1074 bits (542), Expect = 0.0
Identities = 586/597 (98%), Gaps = 3/597 (0%)
Strand = Plus / Plus
Query: 87 tcacttacgccataataacgttttttcaaatcaattgttaaatgtaatcacaatcactac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tcacttacgccataataacgttttttcaaatcaattgttaaatgtaatcacaatcactac 1243
Query: 147 gcgtaacgaaacagtcaatacgaggctatcaaatagaaaacaattggattctcgttccaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 gcgtaacgaaacagtcaatacgaggctatcaaatagaaaacaattggattctcgttccaa 1303
Query: 207 taactggttaactcaggttgaataatcaactcaacttatatcatgctatgttaatccgct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 taactggttaactcaggttgaataatcaactcaacttatatcatgctatgttaatccgct 1363
Query: 267 cttaatccgaggataaatataaattgctacactactggaaatacgtttctatatacatat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 cttaatccgaggataaatataaattgctacactactggaaatacgtttctatatacatat 1423
Query: 327 ggtacatatcgtctactattataatcagttacgcccatcaatttatagtggagcaggcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 ggtacatatcgtctactattataatcagttacgcccatcaatttatagtggagcaggcaa 1483
Query: 387 gtttccgatggtgatagtcttgatgacagtatagtcttcaataccgtgcaaagatccctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 gtttccgatggtgatagtcttgatgacagtatagtcttcaataccgtgcaaagatccctc 1543
Query: 447 tctaccgaatccggattccttaacaccgccgaatggaatggtacactcactgaacaaacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 tctaccgaatccggattccttaacaccgccgaatggaatggtacactcactgaacaaacc 1603
Query: 507 agtgttgcatgataccataccggtttccaaagcttcagcatcggtgtatacggtatcaat 566
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1604 agtgttgcatgagaccataccggtttccaaagcttcagcaacggtgtatacggtatcaat 1663
Query: 567 gttcttagag-acacgtatgatgctagacccatttcagtatcgntagcatattctacgac 625
|||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 1664 gttcttagagaacacgtatgatgctagacccaattcagtatcgttagcatatcctacgac 1723
Query: 626 ttctttcatggtattcgaat-gaatcaatgcacagagaggaccgaaagtcttatctt 681
||||| ||||||| |||||| ||||||| |||||||||||||||||||||| |||||
Sbjct: 1724 ttcttccatggta-tcgaatggaatcaaggcacagagaggaccgaaagtctcatctt 1779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)