BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH01FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1608 1376 0.0
>3x_Contig1608
Length = 13037
Score = 1376 bits (694), Expect = 0.0
Identities = 788/809 (97%), Gaps = 8/809 (0%)
Strand = Plus / Plus
Query: 87 tgagatgctgccaaatacccgactctcttttgctggaaattgttactgctcataacctcc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6159 tgagatgctgccaaatacccgactctcttttgctggaaattgttactgctcataacctcc 6218
Query: 147 aaaacgtggaagttggcccacgccatatcaaaaccgtacatctccaaatatgttagtttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6219 aaaacgtggaagttggcccacgccatatcaaaaccgtacatctccaaatatgttagtttc 6278
Query: 207 aaaacagcatttgtcttcatgttaaaatctggagatttcacttcctccctgcattctaca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6279 aaaacagcatttgtcttcatgttaaaatctggagatttcacttcctccctgcattctaca 6338
Query: 267 atggcttggtttaagaagtcttggagttgctcgggcgtctcgttgttagatctgatccct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6339 atggcttggtttaagaagtcttggagttgctcgggcgtctcgttgttagatctgatccct 6398
Query: 327 tttatcaaatcctttaaagatttctcaaaaaagatgccaaagggtcttagccgcttcttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6399 tttatcaaatcctttaaagatttctcaaaaaagatgccaaagggtcttagccgcttcttc 6458
Query: 387 acgtcttcagcggatgtaccataaatactactcatatttctcgatacagcttgtactgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6459 acgtcttcagcggatgtaccataaatactactcatatttctcgatacagcttgtactgtt 6518
Query: 447 aacaattgactaacggcctcgattgactcttttgctcacttgttaattgatcaagctttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6519 aacaattgactaacggcctcgattgactcttttgctcacttgttaattgatcaagctttc 6578
Query: 507 actttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttatttta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6579 actttgaagcatttcgtacataggatcaatttctgattttttcagctttcctttatttta 6638
Query: 567 ctgcaaagagaagccttagaggtctgaagccaactttgacatttangtcagatcaactaa 626
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6639 ctgcaaagagaagccttagaggtctgaagccaactttgacatttaggtcagatcaactaa 6698
Query: 627 agatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaatttg 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6699 agatagacctaatgcaatatatacaattgtaaggaatcaaaagcatttaggtttaattt- 6757
Query: 687 ggtacagtgttaatggatgagcatcgatcaaagacaccaagtatagatagtaggaattat 746
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6758 ggtacagtg-taatggatgagcatcgatcaaggacaccaagtatagatagtaggaattat 6816
Query: 747 gctattccagaagcgggattacctccccggccagcattgacatatattgaaacggggtgg 806
|||||||||||||| ||||||||| |||||| ||||||||||| || ||||||| || |
Sbjct: 6817 gctattccagaagc-ggattacct-cccggcaggcattgacatagatagaaacggtgt-g 6873
Query: 807 tctgaatcagaatgattcttccgatgatgatgctcaaaattcaatatttccaacagtatt 866
|||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| | |
Sbjct: 6874 tctgaatcag-atgattcttccgatgatgatgctcaaagttcactatttccaacag-aat 6931
Query: 867 ccattggtacgctgggggatgaaccaaat 895
||| ||||||| | | |||||||||||||
Sbjct: 6932 ccagtggtacg-ttgtggatgaaccaaat 6959
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6675
Number of Sequences: 1807
Number of extensions: 6675
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)