BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH01RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig947 1059 0.0
>3x_Contig947
Length = 3468
Score = 1059 bits (534), Expect = 0.0
Identities = 595/610 (97%), Gaps = 4/610 (0%)
Strand = Plus / Plus
Query: 48 cttgtgctctacttccaaagtcggcatattggatgtttggtggtaatagcactgaaactg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2009 cttgtgctctacttccaaagtcggcatattggatgtttggtggtaatagcactgaaactg 2068
Query: 108 gagaaaatcgtctcacctcgtaaatagttgttcgaagttaagaagaagagtgataattgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2069 gagaaaatcgtctcacctcgtaaatagttgttcgaagttaagaagaagagtgataattgc 2128
Query: 168 tggcttaaatttctgctgaaagagagttccaatcgagagagacagtctactatttctgta 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2129 tggcttaaatttctgctgaaagagagttccaatcgagagagacagtctactacttctgta 2188
Query: 228 ggtcacgtgaaaatacatgtgacttggaaatgctgttcagtttggagctctttcaatcaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2189 ggtcacgtgaaaatacatgtgacttggaaatgctgttcagtttggagctctttcaatcaa 2248
Query: 288 tccgggtaagtatcacgaagtcatcgtcaccatgtgaaagaaaggaggaggatggtgtgg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2249 tccgggtaagtatcacgaagtcatcgtcaccatgtgaaagaaaggaggaggatggtgtgg 2308
Query: 348 aaaaaaaaggatcaaaattgctttggaaaagtgcataaaaacgccacaacaagcacaacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2309 aaaaaaaaggatcaaaattgctttggaaaagtgcataaaaacgccacaacaagcacaacc 2368
Query: 408 accgccccaaccacacccttacagaccaaattgagccacattgcagtccgaaccattccc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2369 accgccccaaccacacccttacagaccaaattgagccacattgcagtccgaaccattccc 2428
Query: 468 cgtgaccggttagccatgactacggcacagcacgtgacagttaccatttgcccaacctac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2429 cgtgaccggttagccatgactacggcacagcacgtgacagttaccatttgcccaacctac 2488
Query: 528 gtcggtcttataccacactttttacgtcaaaacaccgtgcagggaatcctgttgaaaacc 587
||||||||||||||||||| ||||||||||||||||||||||| || | || || |||||
Sbjct: 2489 gtcggtcttataccacactatttacgtcaaaacaccgtgcaggaaaccatg-tggaaacc 2547
Query: 588 atttaggc-aaccacatgttgaatgctgtgcgattcgtgggaaagtgttattttgacaac 646
| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||
Sbjct: 2548 a-ttaggcaaaccacatgtgaaatgctgtgcgattcgtggg-aagtgttattttgacgac 2605
Query: 647 ctgggctttt 656
|| ||||||
Sbjct: 2606 atgtgctttt 2615
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7945
Number of Sequences: 1807
Number of extensions: 7945
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)