BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH02RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1031 0.0
>3x_Contig1780
Length = 27883
Score = 1031 bits (520), Expect = 0.0
Identities = 578/592 (97%), Gaps = 4/592 (0%)
Strand = Plus / Plus
Query: 47 atactgcgcatattgtgtttcaatagcaccgtcggctcgtagcttatcccatgtaggtgc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19537 atactgcgcatattgtgtttcaatagcaccgtcggctcgtagcttatcccatgtaggtgc 19596
Query: 107 attttcgttacgtttgtaattaatgatcccagtatcatataagttggctacgtctccaac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19597 attttcgttacgtttgtaattaatgatcccagtatcatataagttggctacgtctccaac 19656
Query: 167 ggtgtacatcttattgacatctgacggagcaaacaaggtaaaccttttactgtcacttac 226
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 19657 ggtgtacatcttagtgacatctgacggagcaaacaaggtaaaccttttacggccacttac 19716
Query: 227 aggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatccacctcctgg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19717 aggaatatatatgttatcggcatgatcatgatgaagtccagatgatgatccacctcctgg 19776
Query: 287 aatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaagaaaactttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19777 aatatttcgtccaagacctaatttttcatcgttcgggtcgaaattgccaagaaaactttg 19836
Query: 347 atcactatccttttcactggcagatccgacccatatgtttatttgttggggcactaactt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19837 atcactatccttttcactggcagatccgacccatatgtttatttgttggggcactaactt 19896
Query: 407 caagaagtgtaattgctctggaatttcgtttactaacttatcaagcggaggttgatatag 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19897 caagaagtgtaattgctctggaatttcgtttactaacttatcaagcggaggttgatatag 19956
Query: 467 ttcccttacagcagctaaatcgtcggcactttcctcttcattt-catcatcactgtcatc 525
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 19957 ttcccttacagcagctaaatcgtcggcacttccctcttcatttccatcatcactgtcatc 20016
Query: 526 attttcttgcatttcctcaaaatattcgcgaa-gtcattgaaatttattg-atccacaga 583
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct: 20017 attttcttgcatttcctcaaaatcatcgcgaaggtcattgaaatttattgaatccacaga 20076
Query: 584 gcccactttccaaacgtcatttggaaacatatttctccc-cattcaacggag 634
|||||||| | ||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 20077 gcccacttccgaaacgtcatctggaaacatatttctcccacattcagcggag 20128
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7938
Number of Sequences: 1807
Number of extensions: 7938
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)