BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH03FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1617 1310 0.0
>3x_Contig1617
Length = 15119
Score = 1310 bits (661), Expect = 0.0
Identities = 754/781 (96%), Gaps = 3/781 (0%)
Strand = Plus / Plus
Query: 90 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34 gtctagatctgctagagtcacttggttttatgataggaatttccttagttttaattgatt 93
Query: 150 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caaattttgatctgacctcttcaatctcttcttcagcttcttcttcttcgttagaatctg 153
Query: 210 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 agaactcttctctttgggtcttgttctctaaattagatggtttcttttgtcccttctttt 213
Query: 270 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cagcccaaagttgagctggtgacttttcattcttgaaacccttgatcaccttatcgtcgc 273
Query: 330 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatcgtttcctgatgattgagctgaggaagaactctttggtcccaagactttgttgtatt 333
Query: 390 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgcatccctctttagcttggattcttgctttaatttagcaatctcagattgaggatcaa 393
Query: 450 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctttttgtcgtaattaggccccgaaacaactagacggggatcttctttactgttttctt 453
Query: 510 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaatttggtt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagcaatcactttttgtagatcaactttaccaattggtttccaggaagaagaatttggtt 513
Query: 570 ctagtggtttcttgtcgaaatcacgttctttcaactctggttcaccccattcatcgtcct 629
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 514 ctagtggtttcttgtcgaaatcacgttcttccaactctggttcaccccattcatcgtcct 573
Query: 630 tcttacctctgctcttctcagtctttgagggagaaacggatctccttgatgggaacgatg 689
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 574 tcttacctctgctcttctcagtctttgggggagaaacggatcttcttgatgggaacgatg 633
Query: 690 gtgtagggtccttttgctcagattgtctggatg-aacactgactggttt-ttggctgtct 747
||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 634 gtgtaggttccttttgctcagattgtctggatgaaacactgactggtttcttggctgtct 693
Query: 748 tggccacaga-gaaattggcttcttggcagcccgtgtttggttgtgaattgaaataccgg 806
|||| |||| |||||||||||||||| ||| ||||||| | ||||||||| || ||
Sbjct: 694 tggcagcagaggaaattggcttcttggaggccggtgtttgttgttgaattgaataacggg 753
Query: 807 ccccagcggagttggtggatttcattaacaattcagatccattctagtcatccccatctc 866
| |||||||||||| || ||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 754 caccagcggagttgctgattttcattaacaattcagattcatctaagtcatcctcatctc 813
Query: 867 t 867
|
Sbjct: 814 t 814
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8083
Number of Sequences: 1807
Number of extensions: 8083
Number of successful extensions: 156
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)