BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH03RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig604 1035 0.0
>3x_Contig604
Length = 2699
Score = 1035 bits (522), Expect = 0.0
Identities = 585/604 (96%), Gaps = 2/604 (0%)
Strand = Plus / Plus
Query: 49 aaattttgcttagcagtttttagaaacgcatgtccattcaataactcttcaaacttggca 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 aaattttgcttagcagtacctagaaacgcatgtccattcaataactcttcaaacttggca 1478
Query: 109 tcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgttttagaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 tcaatttcttgttctgacggtagctgagtgtctgctaaacacattttatccgttttagaa 1538
Query: 169 acatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgattttacttattgcagg 228
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct: 1539 acatgtcgcgtagaatcaacgttcggagttgaaaagttgtgtgatttcatgtatcgcagg 1598
Query: 229 gtctgggagctatgtttgagccctgttcctactagattcagcccttgtattaccagatca 288
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gtctgggagcgaggtttgagccctgttcctactagattcagcccttgtattaccagatca 1658
Query: 289 tcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatggat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 tcgttggaatcattgctagaaaacctggtcttggcatttgcagtcggagcattaatggat 1718
Query: 349 ccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcattggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ccagatcgaagcggaaacaaaatactaatggatttttcattcttatcaacagtcattggt 1778
Query: 409 cggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgatactc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 cggtcaaagtttgttgattttcagttgcagaattatagccagaaaagtgatttgatactc 1838
Query: 469 atcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaat-atttca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1839 atcaatacaaggaaaacgcgatcattcaataatgatctgggagatagcgaaataatttca 1898
Query: 528 ctagataaacgcttgtacaaaaaacaatttgtcanagaatacgattaatttctatgatta 587
|||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct: 1899 ctagataaacgcttgtacaaaaaacaatttgtcaaagaaaacgattaattctaatgatta 1958
Query: 588 gcanagctgattgtagaacagttttagactctcttc-agtgtacgtatttatgattttcc 646
||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 1959 gcaaagctgattgtagaacagttttagactctcttcaagtgtacgtatttatggatttcc 2018
Query: 647 tttg 650
||||
Sbjct: 2019 tttg 2022
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 1807
Number of extensions: 6846
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)