BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZH04RM1.SCF screened BAC_end (968 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1568 823 0.0 >3x_Contig1568 Length = 12470 Score = 823 bits (415), Expect = 0.0 Identities = 482/499 (96%), Gaps = 4/499 (0%) Strand = Plus / Plus Query: 48 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7765 cgagataaattttgggataagcccaattgaaatgattcttcgatgtaacttttctactaa 7824 Query: 108 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7825 agccattacttaatcactttgttctagttattaggctgagaatattaaatgccacccaat 7884 Query: 168 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7885 ggctctacaggaagcaactttgtattaaagttctatcttccattatcgtttgctgaatat 7944 Query: 228 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7945 gtctcaataaaataaaatgccttttcaattttgatatcaagaaatattgttcactgatga 8004 Query: 288 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8005 aatatgatcaagacagacgctaaccatgaatgaataatcaatacaagcaacatctgatat 8064 Query: 348 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttatgccgatct 407 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 8065 atcgaaacaaacgcatatgatacagcaacatggattccagttcaacctttaggccgatct 8124 Query: 408 ctatatcggacgagaaggatcttagtgtaccctttttagttggattggatactccgcgta 467 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 8125 ctatatcggacgagaaggatcttagtgtaccctttttag-tggattggatactcgcggta 8183 Query: 468 attttatgtttatttgcgcccattttacttaagtagaaattttaccatgggtgccgacaa 527 || |||||| |||| ||| |||||||||||| |||| |||| || ||||||||| ||| | Sbjct: 8184 atattatgtatattggcg-ccattttacttaggtag-aattctagcatgggtgctgac-a 8240 Query: 528 aaagggttggacttttggg 546 || ||||||||||| |||| Sbjct: 8241 aaggggttggacttctggg 8259 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,984 Number of Sequences: 1807 Number of extensions: 17984 Number of successful extensions: 127 Number of sequences better than 1.0e-20: 1 length of query: 968 length of database: 10,358,551 effective HSP length: 16 effective length of query: 952 effective length of database: 10,329,639 effective search space: 9833816328 effective search space used: 9833816328 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)