BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH05FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1241 0.0
>3x_Contig1712
Length = 23668
Score = 1241 bits (626), Expect = 0.0
Identities = 670/681 (98%), Gaps = 3/681 (0%)
Strand = Plus / Plus
Query: 86 cacaagtaattctcatctctgtttgacgggttcacctcagtcggactcccactaattcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 cacaagtaattctcatctctgtttgacgggttcacctcagtcggactcccactaattcaa 5565
Query: 146 ttctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5566 ttctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctcca 5625
Query: 206 gcatgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5626 gcatgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgca 5685
Query: 266 ttaattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5686 ttaattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgc 5745
Query: 326 tctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5746 tctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatca 5805
Query: 386 cctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5806 cctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgt 5865
Query: 446 ttaattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5866 ttaattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacac 5925
Query: 506 tgataaggctcctctaatacgcatcgagttcatctgtaatttggaaagtactttaccttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5926 tgataaggctcctctaatacgcatcgagttcatctgtaatttggaaagtactttaccttt 5985
Query: 566 gcaagtcaaacttcattttntaaaccccgatatagaaaagttgcaactgcagagccattc 625
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5986 gcaagtcaaactccattttttaaaccccgatatagaaaagttgcaactgcagagccattc 6045
Query: 626 tgttaaaacggatttcagatgtcttatttctggctgctgtgtactaaataaagactttct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6046 tgttaaaacggatttcagatgtcttatttctggctgctgtgtactaaataaagacattct 6105
Query: 686 acccgatatttagcaaattacgaataccccgtctgggattttctctagccataaataacc 745
||| |||||||||||||||||||||||| ||||| |||||||||||||| || ||| | |
Sbjct: 6106 acctgatatttagcaaattacgaatacctcgtct-ggattttctctagctat-aattatc 6163
Query: 746 tttctttttttttctttttgc 766
|||| ||||||||||||||||
Sbjct: 6164 tttc-ttttttttctttttgc 6183
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8360
Number of Sequences: 1807
Number of extensions: 8360
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)