BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH06FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1245 0.0
>3x_Contig1426
Length = 8319
Score = 1245 bits (628), Expect = 0.0
Identities = 787/832 (94%), Gaps = 6/832 (0%)
Strand = Plus / Plus
Query: 87 catggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgcaata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 catggagagaacaacaatgaactatactatttgtttggagtagtgttaggtcttgcaata 1838
Query: 147 tataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgcaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 tataacagtactatattggacttacattttgcgagggccatgtacaagaaactatgcaat 1898
Query: 207 gagcggatcacttttgtttattatgaggagttgtaccctgagacagcaagaaatttaaag 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 gagcggatcacttttgaagattatgaggagttgtaccctgagacagcaagaaatttaaag 1958
Query: 267 aaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgagacc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 aaaatgttgagttattcggaactagattttagtgatatatttggattgtcgtttgagacc 2018
Query: 327 acgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggaggataa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2019 acgtattacgatgtagccagtggtatcaacgtcacgaaaccgttatgtgacggaggagaa 2078
Query: 387 tcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttttat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2079 tcaatcccagtaacctcggagaataagacagagtttgttgaaaggtgggtaaatttttat 2138
Query: 447 atgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagattcatc 506
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2139 atgaatgagggggtctcatcgagttttagtgcattccaatccgggtttacaagagtcatc 2198
Query: 507 ggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgtggc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2199 ggggatggtttggctttcccgatgttcaaaagttgtgaagtagaaaggctcatctgtggc 2258
Query: 567 agcatataacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaagcgga 626
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2259 agcatagaacaagacatggatttcgaacaacttcgcgctgtgacgaaataccaaggcgga 2318
Query: 627 tttcataaccaaacccccgtagtggaatggctatgggaaatactaccacatttatcccat 686
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2319 ttccataaccaaaccccggtagtggaatggctatgggaaatactaccacaattatcccat 2378
Query: 687 gaacagcaacgtcaattttcttcatttcgtgactgggagtgacagatttccattgacggg 746
||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 2379 gaacagcaacgtcaa-tttctccatttcgtgactgggagtgacagagttccagtgacggg 2437
Query: 747 acctgcgacgctttccgtt-aaagtataccgcacacggtgc-gatcaaatgatcagttgt 804
|| |||||||| ||||||| || ||| ||||||| || | ||||| |||||||||||
Sbjct: 2438 acttgcgacgc-ttccgttcaaggtaacccgcacaacgtccggatcacatgatcagttgc 2496
Query: 805 ccacttgccataccttgtttaacgaactttgcttggacaaatttaattcacgtgatactt 864
||||| |||||||| || |||||||| |||||| || ||| | | ||||||||||||
Sbjct: 2497 ccactgcccatacctgtttcaacgaactctgcttgtacgaatatgagtcacgtgatactc 2556
Query: 865 ttctt-tgcaatttgtgactgccctcaatatgt-tgaaggttatgggtttaa 914
||||| ||| ||| |||||||||||| | |||| ||| ||||||||||||||
Sbjct: 2557 ttcttctgcgattggtgactgccctcgaaatgtatgagggttatgggtttaa 2608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5969
Number of Sequences: 1807
Number of extensions: 5969
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)