BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH06RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1517 1094 0.0
>3x_Contig1517
Length = 8289
Score = 1094 bits (552), Expect = 0.0
Identities = 698/735 (94%), Gaps = 9/735 (1%)
Strand = Plus / Plus
Query: 51 cttttcagattccatcgaaggttgaaagagaaagaattatatgtcactacgaattttgaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6454 cttttcagattccatcgaaggttgaaagagaaagaattatatgtcactacgaattttgaa 6513
Query: 111 gccgcgatatctttcattgactcgttgacaactaaggatataataacatattgccaacac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6514 gccgcgatatctttcattgactcgttgacaactaaggatataataacatattgccaacac 6573
Query: 171 actgatgaattaaaacttccgcatttggagtctatcagtgaacaagtgaaacttcctcta 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6574 actgatgaattaaaacttccgcatttggagtctatcagtgaacaagtgaaacttcctcta 6633
Query: 231 tcgacagaggagtcatttataccggatttcaaaaggtctaactctctttctgatttaata 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634 gcgacagaggagtcatttataccggatttcaaaaggtctaactctctttctgatttaata 6693
Query: 291 tctgttggtaatgttattgattctggttttagaaacttgatgggtcgcatcaaaacttat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6694 tctgttggtaatgttattgattctggttttagaaacttgatgggtcgcatcaaaacttat 6753
Query: 351 accccgtcaccgtcaccaccaccaccgtatgtagcacagatacaggtaccgctaccaagc 410
|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 6754 accccgccaccgccaccaccaccaccgcatgtagcacagatacaggtaccgctaccaagc 6813
Query: 411 atcgaagttaccgatggtcctgctaccgattggagaaagtacaaggattataaattcgag 470
||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 6814 atcgaggttaccgagggtcctgctaccgattggagaaggtacaaggattataaattcgag 6873
Query: 471 gacttgaaagttagtgatatgcaaagtatatttgatatatatcgngatttagctaat-aa 529
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 6874 gacttgaaggttagtgatatgcaaagtatatttgatatatatcgtgatttagctaataaa 6933
Query: 530 aataaattatgatgaggaagctaatgaattaatatataagatgggtcgtaatcaatataa 589
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6934 aataaataatgatgaggaagctaatgaattaatatataagat-ggtcgtaatcaatataa 6992
Query: 590 taggatttagtcctaccgggaagagtttcgacaatatatctttaactgaagaaagctcct 649
|| || ||||| ||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 6993 ta-gaattagt-ctaactgggagagtttcgacaatatatctttaactgaagaaagctcct 7050
Query: 650 tt-gaatcaattcagtaataactttttgtgc-agaatttggataacctgtctggtatatt 707
|| ||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 7051 ttggaaccaattcagtagtaactttttgtgcaagagtttggataacctgtctggtatatt 7110
Query: 708 ta-caaactttggctggggctccaaataacgga-ccatttcttttatattaccaattttt 765
| || |||||| |||| |||||||||||| || | |||||| || || ||| ||| | |
Sbjct: 7111 caccagactttgtctggtgctccaaataactgagcaatttctctt-tagtacgaatctct 7169
Query: 766 gaaggccttgataaa 780
|||||||||||||||
Sbjct: 7170 gaaggccttgataaa 7184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8941
Number of Sequences: 1807
Number of extensions: 8941
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)