BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZH07FM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1749                                                        1104   0.0  

>3x_Contig1749 
          Length = 22923

 Score = 1104 bits (557), Expect = 0.0
 Identities = 593/601 (98%), Gaps = 3/601 (0%)
 Strand = Plus / Minus

                                                                         
Query: 88    cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 147
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13263 cggtttacaaagcgatttattattccccttatgaaagtagctgcactgtttgaaatacag 13204

                                                                         
Query: 148   cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13203 cgaaccgaaacacgaatacagtgcagcaaattcccctatagcagtatggtgggctccatt 13144

                                                                         
Query: 208   gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13143 gccttatgaaccaagctatccttactggcctgacggatataccccaagtgtatcctgtag 13084

                                                                         
Query: 268   tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13083 tgccatgttctaaggtatgcagatttccgcatcttagcgcctaattattatttgtatttt 13024

                                                                         
Query: 328   gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13023 gtttagaacgattgggcattttgtttgtggtttagataagggaaattatcttccatacaa 12964

                                                                         
Query: 388   aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12963 aaatgtcatttccgttagcgtatatgaaaaaaaacatggatcgcagataaaagttaagat 12904

                                                                         
Query: 448   aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12903 aagccattccattctcttctatgccatttacagtgttatcctcaaagttagaattcggat 12844

                                                                         
Query: 508   acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12843 acaaacgacagttctcgtacttgttattggcaagcgaaacttcaatggctaggtgaagag 12784

                                                                         
Query: 568   atagtatataaactgctcagttat-gaattaataaagtagcagaggttcatgagatgtta 626
             | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 12783 aaagtatataaactgctcagttatggaattaataaagtagcagaggttcatgagatgtta 12724

                                                                         
Query: 627   gatctcgtttaattcccgaatgtcaa-ttttactacggttat-aatatatttcctaataa 684
             ||||||||||||||||  | |||||| ||||||||||||||| |||||| ||||||||||
Sbjct: 12723 gatctcgtttaattccgaagtgtcaatttttactacggttataaatatagttcctaataa 12664

              
Query: 685   a 685
             |
Sbjct: 12663 a 12663


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6408
Number of Sequences: 1807
Number of extensions: 6408
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)