BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH07RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1051 0.0
>3x_Contig1294
Length = 6938
Score = 1051 bits (530), Expect = 0.0
Identities = 557/565 (98%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 46 ctttgacctctttatcttcct-gttagtttcgaaagcatcaccgtgcaaatccttcaatt 104
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 4329 ctttgacctctttatcttcctcgatagtttcgaaagcatcaccgtgcaaatccttcaatt 4270
Query: 105 tatcaatctttagagactctggcaacttgacagcaaatcccttaattaaggaatagtcat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 tatcaatctttagagactctggcaacttgacagcaaatcccttaattaaggaatagtcat 4210
Query: 165 ggacaatagtaccacccagagaagaaatggagtttttgatctttgaagcgtcggcttctg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 ggacaatagtaccacccagagaagaaatggagtttttgatctttgaagcgtcggcttctg 4150
Query: 225 gaacgctgtctttgaatgtgataatgaacgatttgaatgtcatgattgttatgattgggg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gaacgctgtctttgaatgtgataatgaacgatttgaatgtcatgattgttatgattgggg 4090
Query: 285 ttgtttgcttctggctcagaatgaccccttctttaccgagactatcaaatgtggtttata 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 ttgtttgcttctggctcagaatgaccccttctttaccgagactatcaaatgtggtttata 4030
Query: 345 gaagagaaagttactgagtcaaacagatttcatttatagaagagaaagttactgagtcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 gaagagaaagttactgagtcaaacagatttcatttatagaagagaaagttactgagtcaa 3970
Query: 405 acagatttcatttatatagcaacaaagtatagactataaagaacaaaagaagtcagggac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3969 acagatttcatttatatagcaacaaagtatagactataaagaacaaaagaagtcagggac 3910
Query: 465 tgtgtaagtgcaatcgcgtcagtaaggtatattttggacgttattggtattaataaatga 524
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 3909 tgtgtaagtgcaatcgcgtcagtaaggtatattttggacgttataggtataaataaatga 3850
Query: 525 aacanacaaaagtatattcataaataagagtaaaattggttgattgtgatctctgaattg 584
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3849 aacaaacaaaagtatatacataaataagagtaaaattggttgattgtgatctctgaattg 3790
Query: 585 tttctgcgaaaatggttccttaacg 609
||||||||||| ||| |||||||||
Sbjct: 3789 tttctgcgaaattgggtccttaacg 3765
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9408
Number of Sequences: 1807
Number of extensions: 9408
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)