BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH08FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1686 533 e-151
>3x_Contig1686
Length = 15382
Score = 533 bits (269), Expect = e-151
Identities = 309/317 (97%), Gaps = 4/317 (1%)
Strand = Plus / Plus
Query: 84 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2359 agtccagaaatgaaggaatctgatacgcattttgctgctaccgcttaggtgaattcaagt 2418
Query: 144 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2419 gaacctgcatttgaacagtatagaaatatgtcagattcacccaatgaaattcttcaatat 2478
Query: 204 agggatagtcctgagttcgaagattgctgcgatgctatatctcaagatttatttgaattg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2479 agggatagtcctgagttcgaagattgctgcgatgctatatctcaagatttatttgaattg 2538
Query: 264 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2539 aacgggagcctttcaactatgaaccactttgtaacggctttggaaacgaatgtatcccac 2598
Query: 324 gggtaaatctaacactaaagttattcgac-atatcatttagaagacggtttgaactaatt 382
|||||||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||
Sbjct: 2599 -ggtaaatctaacactaaagtta-tcgacaatatcaataagaagacgg-ttgaactaata 2655
Query: 383 gacaaaagttcaaaatt 399
||||||||| |||||||
Sbjct: 2656 gacaaaagtacaaaatt 2672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,614
Number of Sequences: 1807
Number of extensions: 29614
Number of successful extensions: 348
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)