BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH09FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1306 0.0
>3x_Contig1785
Length = 37935
Score = 1306 bits (659), Expect = 0.0
Identities = 805/842 (95%), Gaps = 10/842 (1%)
Strand = Plus / Plus
Query: 87 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 22131
Query: 147 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22132 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 22191
Query: 207 aaatcaagtttgaacgcaattactgcttctactggataaaactcactgctagctacttta 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22192 aaatcaagtttgaacgcaattactgcttctactggataaaactcactgctagctacttta 22251
Query: 267 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22252 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 22311
Query: 327 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22312 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 22371
Query: 387 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22372 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 22431
Query: 447 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22432 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 22491
Query: 507 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22492 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 22551
Query: 567 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22552 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 22611
Query: 627 agtccattttatggagtatatatttctgaattcgttgctttaagttt-ggttaggtttca 685
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 22612 agtccattttatggggtatataattctgaattcgttgctttaagtttgggttaggtttca 22671
Query: 686 ttagaaaccctatttaagggagtttttgaagtt-atcaatcatactgccagtgtctgtgc 744
|||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 22672 ttagaaaccctaattaagggaagttttgaagttaatcaatcatactgccagtgtctgtgc 22731
Query: 745 -ataaggggattaagaactgcttagcaaaccattagtagaagataaattattggctattg 803
||| ||| || |||| ||||||||||||| || |||||| |||||||||||| ||||||
Sbjct: 22732 aataggggaataaagagctgcttagcaaactataagtagaggataaattattgtctattg 22791
Query: 804 aaaaaactc--ttattatttttttgtgggaaagaactgactattttg-aataaccggttt 860
||||| ||| | || || | | |||||||||| ||||||||||||| |||||| | |||
Sbjct: 22792 aaaaagctccttaataatatatatgtgggaaag-actgactattttgtaataactgtttt 22850
Query: 861 ccctgctcca-tggtcggaaaacttttatgga-ttagactt-ttcttgggttagggtgca 917
| |||||| | || ||||||| |||||||||| |||||||| |||||| |||||| ||||
Sbjct: 22851 cgctgctcgattgttcggaaagcttttatggagttagacttattcttgcgttaggttgca 22910
Query: 918 aa 919
||
Sbjct: 22911 aa 22912
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7660
Number of Sequences: 1807
Number of extensions: 7660
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)