BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH10FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1326 1265 0.0
>3x_Contig1326
Length = 4875
Score = 1265 bits (638), Expect = 0.0
Identities = 696/706 (98%), Gaps = 7/706 (0%)
Strand = Plus / Plus
Query: 87 tgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaagccatgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgtcaaagtattccttgtattggttggcttcacccttgtcagccataatcaaagccatgt 251
Query: 147 agatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgcgcgg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agatgtaagtagaaggtcttgggttcaaagacaacgattcttccaggttaatatgcgcgg 311
Query: 207 taattggatcatttttgaagaacttgaaaatacccacatgttcgaaggcgatggcagcct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 taattggatcatttttgaagaacttgaaaatacccacatgttcgaaggcgatggcagcct 371
Query: 267 tcttcttcaaagattcattatctggagaagattctaattctttcttgtataactcggcag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcttcttcaaagattcattatctggagaagattctaattctttcttgtataactcggcag 431
Query: 327 ccttggtgaattcttcatcagccaattcgtaacatccggtttgacatttgtacaagtttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccttggtgaattcttcatcagccaattcgtaacatccggtttgacatttgtacaagtttt 491
Query: 387 ccaaaccttttttcaactcaacatctgcttcattttcgccatcgtaatcatcgaaagaag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccaaaccttttttcaactcaacatctgcttcattttcgccatcgtaatcatcgaaagaag 551
Query: 447 tttcagggttgaagataccgaagaatgatgccaaagaggtgttagatggtaatggagatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tttcagggttgaagataccgaagaatgatgccaaagaggtgttagatggtaatggagatt 611
Query: 507 ctttaccctggttctccttcaatttttcacccaagacctttgtggcttgtttgttcatgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctttaccctggttctccttcaatttttcacccaagacctttgtggcttgtttgttcatgt 671
Query: 567 ttctttccagcagttgctccacggattgaccgctgtattcacccaacatagagacagccg 626
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 672 ttctttccagcagttgctccacggattgaccgctgtattcacccaacaaagagacagccg 731
Query: 627 acaagtcaaacatagcatcggagaattggcccaagttttcataagcactagctcttctc- 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 acaagtcaaacatagcatcggagaattggcccaagttttcataagcactagctcttctca 791
Query: 686 accaacatttggagttatcaagcttcaatttcaaaagcggcagtggntatcttcaacaac 745
||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct: 792 accaacatttggagtaatcaggcttcaatttc-aaagcggcagtgg-tatcttcaacaac 849
Query: 746 ttttttcgaaattgtttaattgtagacgtatgccagcagatctgtt 791
||||||||||||| ||||||| ||||||||| |||||||||||||
Sbjct: 850 -tttttcgaaattg-ttaattg-agacgtatg-cagcagatctgtt 891
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8439
Number of Sequences: 1807
Number of extensions: 8439
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)