BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH10RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig640 1217 0.0
>3x_Contig640
Length = 3164
Score = 1217 bits (614), Expect = 0.0
Identities = 696/713 (97%), Gaps = 8/713 (1%)
Strand = Plus / Minus
Query: 52 acaacacctctaccagaagtatccacagtagtctaaaagaccagtcaaatcttccatgac 111
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1118 acaacacctctaccagaagtatccacag-agtctaaaagaccagtcaaatcttccatgac 1060
Query: 112 gtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaaccaga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 gtcatccatcatttcttcttcatcatcgtctggacctacaactaataatcgggaaccaga 1000
Query: 172 aacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttcttt 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 aacagccttttccaaatcatttgcagcaatttttacacctagagcagccttgacttcttt 940
Query: 232 gtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaaggc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gtgatgttgatattcagacttcaaacgtaactcacgtaagggttgaggtgtcaacaaggc 880
Query: 292 tctgatattcgtcacaatcggaccgttcataccacataaaacgattctgtcaccctctct 351
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 879 tctgatattcgtcacaatcggaccgttcataccacataaaaagattctgtaaccctctct 820
Query: 352 taagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttcac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 taagtaaccattagatagaataacatcgatagtggtaccgaaaccttcaacaaccttcac 760
Query: 412 ttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttttg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ttcaagaattgtagcttcaacgtgagacaaatatttcaattgcttagacattctcttttg 700
Query: 472 agtcaattctaatagcaaccacaacaaatcatgaacaccttcacctgtaacggcagatgt 531
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 699 agtcaattctaatagcaaccacaacaaatcaggaacaccttcacctgtaacggcagatgt 640
Query: 532 tggaacaatagagacgtatttggctaggttgttgnttt-gaaatacaattctgagttcaa 590
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 639 tggaacaatagagacgtatttggctaggttgttgttttggaaatacaattctgagttcaa 580
Query: 591 accttgttcagcaagagcgactttgatgttgtcaagtctagttttggaactcttgcttaa 650
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 579 accttgttcagcaagagcgactttgatgttgtcaagtctag-tttggaactcttgcttaa 521
Query: 651 ctgctcgttcttggttgtcaaaagagtctctggaaagatttgtttggttgtaattaccca 710
||||||||||||| |||||||| |||||||| |||||| |||||||| ||||||||||||
Sbjct: 520 ctgctcgttcttgtttgtcaaaggagtctct-gaaagagttgtttgg-tgtaattaccca 463
Query: 711 gtcgtaccatct-tcgatcttatttaaggc-acgatgaaaaggagcctttctg 761
||||||| |||| ||||||||||| ||||| |||||| |||||||||||||||
Sbjct: 462 gtcgtacaatctatcgatcttattcaaggcaacgatg-aaaggagcctttctg 411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6889
Number of Sequences: 1807
Number of extensions: 6889
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)