BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH11FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1361 1098 0.0
>3x_Contig1361
Length = 8765
Score = 1098 bits (554), Expect = 0.0
Identities = 669/698 (95%), Gaps = 7/698 (1%)
Strand = Plus / Plus
Query: 86 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 acgtttcattacggtgactacgaacaattagatatggatcaattaatgtcgaatcaatta 4448
Query: 146 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 taccatgccaattcatatatttacagaaaggcaataataagaaaacactacttatctcat 4508
Query: 206 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 acaattcattcatatgtggttaaaaatagagaatcgatcttgaatagggcatttttagaa 4568
Query: 266 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 tcatttaacatagatgttgattacgcagagttcttggacgatgcacttgatgaaaactgg 4628
Query: 326 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4629 gaattaaggcaagagcttgaatcaaaagagaaatggtggatcttgaagcctagtatgagt 4688
Query: 386 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4689 gataagggtcaaggtatccgcatattcaaaactattgaacaattacaagctatttttgac 4748
Query: 446 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4749 tcgtttgaagaagatgaaactgatgatgaggacactgagacgaatactaataaagtggcc 4808
Query: 506 acttctcaattacgccatttcatcgtccaagattacttacacaatcctcttttattgagt 565
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4809 acttctcaattacgccatttcatcgtccaagaatacttacacaatcctcttttattgagt 4868
Query: 566 gaagcacatggcaaggaaatttcatatcagatagtatgttacctgcagtggcgatctaca 625
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4869 gaagcacatggc-aggaaatttcatatcagatgttatgttacctgcagtggcgatctaca 4927
Query: 626 ggtgttttgtttatgataaaatgctaacacttttcgcttcccaacaattttgtcccacct 685
|||| ||||||||||||| ||||||| |||||||||| ||||||||| ||||| ||||||
Sbjct: 4928 ggtg-tttgtttatgatagaatgctagcacttttcgc-tcccaacaaatttgtaccacct 4985
Query: 686 aaccaaaaattatacgtttttaaatattgagccattaagctggccatttgaactaatact 745
| | || ||| ||| ||||| ||||||||| ||| |||| | |||||| |||||||||
Sbjct: 4986 accgaagaatatgacg-ttttagatattgagcaatt-agcttgtcatttg-actaatact 5042
Query: 746 tgctttgcaacgggtgaatgattttaaatcaaattctg 783
||||| ||||| || ||||| |||||||||||||||
Sbjct: 5043 tgcttgcaaacggatg-atgatattaaatcaaattctg 5079
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7483
Number of Sequences: 1807
Number of extensions: 7483
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)