BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZH11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1761 1037 0.0
>3x_Contig1761
Length = 23186
Score = 1037 bits (523), Expect = 0.0
Identities = 551/559 (98%), Gaps = 1/559 (0%)
Strand = Plus / Minus
Query: 54 aatttcttgatctttcatttcttgttcgacgttccaaatgcttggatccttgctgtaatg 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14589 aatttcttgatctttcatttcttgttcgacgttccaaatgcttggatccttgctgtaatg 14530
Query: 114 gataggaacgtattggcgtctaatgtcgtgttctaacaatgatacttcacaacttatgtt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 gataggaacgtattggcgtctaatgtcgtgttctaacaatgatacttcacaacttatgtt 14470
Query: 174 atcatagtcgatataaataaccttagctgggtaggtttttccaatttcataaacttcttc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 atcatagtcgatataaataaccttagctgggtaggtttttccaatttcataaacttcttc 14410
Query: 234 agcaggtcttttcaactgagcacctatgtgacgttgtgcattgataacacactcgacacc 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 agcaggtcttttcaactgagcacctatgtgacgttgtgcattgataacacactcgacacc 14350
Query: 294 agaatttgtgacaccatatatgtcattatgtctgaatctttccactctaactggaatgat 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14349 agaatttgtgacaccatatatgtcattatgtctgaatctttccactctaactggaatgat 14290
Query: 354 acatcccttgaagaaggttttttcagattcacctgtcaaactcttgaagacttcgtcacc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14289 acatcccttgaagaaggttttttcagattcacctgtcaaactcttgaagacttcgtcacc 14230
Query: 414 gtgtagtgggtggaaatcatttcttagttcttcaaatccttccaaaagttccaagacaat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14229 gtgtagtgggtggaaatcatttcttagttcttcaaatccttccaaaagttccaagacaat 14170
Query: 474 agtattcaaattgttcaactttcctttgacctgtattcttttcaagttcttctgcgtacc 533
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14169 agtattcaaattgttcaacttt-ctttgacctgtattcttttcaagttcttctgcgtacg 14111
Query: 534 cttcgaagttcaaagacttaagtttggttttgcggtctggatctttccttaataattcga 593
|||||| ||||||||||| |||||||||| ||||||||||||||| ||| ||||||||||
Sbjct: 14110 cttcgaggttcaaagactcaagtttggttctgcggtctggatcttccctcaataattcga 14051
Query: 594 taaattcgctcataatacc 612
|||||||||||||| ||||
Sbjct: 14050 taaattcgctcatagtacc 14032
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8147
Number of Sequences: 1807
Number of extensions: 8147
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)